Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 MYCLP2-201ENST00000449268 967 ntBASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 MIR6805-201ENST00000615055 62 ntBASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 IGHV3-72-202ENST00000621503 303 ntBASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 AC004461.2-201ENST00000629517 803 ntBASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 RAB43P1-201ENST00000561790 589 ntBASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 AC093726.1-201ENST00000608064 963 ntBASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 FAM45BP-202ENST00000592932 1624 ntBASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 PPT1-215ENST00000641471 2368 ntBASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 AL603832.2-201ENST00000566195 2125 ntBASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
TMX2-CTNND1H3BSU7 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TMX2-CTNND1H3BSU7 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
TMX2-CTNND1H3BSU7 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
TMX2-CTNND1H3BSU7 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TMX2-CTNND1H3BSU7 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.48■□□□□ 0.07
TMX2-CTNND1H3BSU7 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TMX2-CTNND1H3BSU7 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TMX2-CTNND1H3BSU7 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
TMX2-CTNND1H3BSU7 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms