Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 AC092127.1-201ENST00000567093 3455 ntBASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 AC136604.1-201ENST00000418535 575 ntBASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 TARDBPP1-201ENST00000442013 1203 ntBASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 AC009477.1-201ENST00000452936 217 ntBASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 AL596325.1-201ENST00000563991 1082 ntBASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 AL109936.8-201ENST00000641772 604 ntBASIC15.27■□□□□ 0.04
CUEDC1Q9NWM3 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CUEDC1Q9NWM3 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 AC074338.1-201ENST00000416825 156 ntBASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 ATP5G2P4-201ENST00000442175 420 ntBASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 SPDYE22P-201ENST00000582158 798 ntBASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 AC009118.2-201ENST00000613275 655 ntBASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.26■□□□□ 0.03
CUEDC1Q9NWM3 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms