Protein–RNA interactions for Protein: Q9NQC3

RTN4, Reticulon-4, humanhuman

Known RBP Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4Q9NQC3 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 PIGN-226ENST00000638591 2776 ntTSL 5 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 LINC01749-202ENST00000607802 3408 ntTSL 2 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 AC068987.2-201ENST00000565518 896 ntBASIC18.78■□□□□ 0.6
RTN4Q9NQC3 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 AP005901.3-202ENST00000581653 237 ntBASIC18.78■□□□□ 0.6
RTN4Q9NQC3 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 PCAT18-201ENST00000579458 2598 ntTSL 2 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC18.78■□□□□ 0.6
RTN4Q9NQC3 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 AC016027.1-202ENST00000607927 1699 ntBASIC18.77■□□□□ 0.6
RTN4Q9NQC3 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 CCDC152-202ENST00000388827 1237 ntTSL 2 BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 KLF4P1-201ENST00000412782 1185 ntBASIC18.77■□□□□ 0.6
RTN4Q9NQC3 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 AC092068.1-201ENST00000592525 454 ntTSL 2 BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RTN4Q9NQC3 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
RTN4Q9NQC3 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
RTN4Q9NQC3 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC18.77■□□□□ 0.59
RTN4Q9NQC3 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RTN4Q9NQC3 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC18.77■□□□□ 0.59
RTN4Q9NQC3 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RTN4Q9NQC3 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN4Q9NQC3 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms