Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 AC009477.1-201ENST00000452936 217 ntBASIC12.18□□□□□ -0.46
CCDC140Q96MF4 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 SDHAP3-202ENST00000515467 728 ntBASIC12.18□□□□□ -0.46
CCDC140Q96MF4 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 SSH2-210ENST00000582084 560 ntTSL 3 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 AC112693.3-201ENST00000624819 1983 ntBASIC12.18□□□□□ -0.46
CCDC140Q96MF4 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 C18orf15-201ENST00000623680 2534 ntBASIC12.17□□□□□ -0.46
CCDC140Q96MF4 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 AC015922.1-201ENST00000421102 1152 ntBASIC12.17□□□□□ -0.46
CCDC140Q96MF4 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 AC005498.2-205ENST00000593218 784 ntBASIC12.17□□□□□ -0.46
CCDC140Q96MF4 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 AF228730.6-201ENST00000641497 218 ntBASIC12.17□□□□□ -0.46
CCDC140Q96MF4 AC084121.3-201ENST00000641716 218 ntBASIC12.17□□□□□ -0.46
CCDC140Q96MF4 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 DEK-201ENST00000244776 1441 ntTSL 2 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms