Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 C20orf181-201ENST00000623918 480 ntBASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 AC026396.1-201ENST00000419388 421 ntBASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 AC084121.4-201ENST00000641598 221 ntBASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 AF228730.8-201ENST00000642140 221 ntBASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
ATG4AQ8WYN0 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
ATG4AQ8WYN0 AL009178.2-201ENST00000597278 2719 ntBASIC16.33■□□□□ 0.21
ATG4AQ8WYN0 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
ATG4AQ8WYN0 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.33■□□□□ 0.21
ATG4AQ8WYN0 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.33■□□□□ 0.21
ATG4AQ8WYN0 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.33■□□□□ 0.21
ATG4AQ8WYN0 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.33■□□□□ 0.21
ATG4AQ8WYN0 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.33■□□□□ 0.21
ATG4AQ8WYN0 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.33■□□□□ 0.21
ATG4AQ8WYN0 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 HTR5BP-201ENST00000430851 1154 ntBASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 AC026979.3-201ENST00000607315 403 ntBASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 AC068587.6-202ENST00000641839 5619 ntBASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 AC023908.3-201ENST00000564211 3047 ntBASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 SNX18-202ENST00000343017 3140 ntBASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms