Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 AC073347.1-201ENST00000421633 2643 ntBASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 AL109954.1-202ENST00000564051 2148 ntBASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 AC099063.4-201ENST00000641099 1602 ntBASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 AC006486.2-201ENST00000624246 2199 ntBASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 LRRFIP1P1-201ENST00000498774 2246 ntBASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 CICP4-201ENST00000447359 2812 ntBASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 PTMS-202ENST00000389462 773 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 AC040169.1-201ENST00000565382 521 ntBASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 CITED2-204ENST00000618718 901 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 AC084121.4-201ENST00000641598 221 ntBASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 AC092865.6-201ENST00000642101 219 ntBASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 AF228730.8-201ENST00000642140 221 ntBASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 AC090616.6-203ENST00000579186 1945 ntBASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC54Q8NEL0 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 TKT-202ENST00000423516 2075 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 FAM58CP-201ENST00000435741 640 ntBASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 MAX-210ENST00000555419 765 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 MIR4313-201ENST00000580760 101 ntBASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 AC013268.4-201ENST00000637413 2228 ntBASIC13.78□□□□□ -0.2
CCDC54Q8NEL0 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.77□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms