Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.67□□□□□ -0.06
BEST3Q8N1M1 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
BEST3Q8N1M1 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
BEST3Q8N1M1 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
BEST3Q8N1M1 AP001282.1-201ENST00000531301 1499 ntBASIC14.67□□□□□ -0.06
BEST3Q8N1M1 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
BEST3Q8N1M1 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
BEST3Q8N1M1 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
BEST3Q8N1M1 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
BEST3Q8N1M1 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
BEST3Q8N1M1 AC134407.2-201ENST00000625089 1978 ntBASIC14.67□□□□□ -0.06
BEST3Q8N1M1 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
BEST3Q8N1M1 AC067930.6-201ENST00000623257 4947 ntBASIC14.67□□□□□ -0.06
BEST3Q8N1M1 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
BEST3Q8N1M1 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
BEST3Q8N1M1 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 INE1-201ENST00000456273 945 ntBASIC14.65□□□□□ -0.06
BEST3Q8N1M1 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 AC093726.1-201ENST00000608064 963 ntBASIC14.65□□□□□ -0.06
BEST3Q8N1M1 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 AL365209.1-201ENST00000624418 6473 ntBASIC14.65□□□□□ -0.06
BEST3Q8N1M1 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 AL662844.4-201ENST00000606367 2838 ntBASIC14.65□□□□□ -0.06
BEST3Q8N1M1 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
BEST3Q8N1M1 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.07
BEST3Q8N1M1 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
BEST3Q8N1M1 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
BEST3Q8N1M1 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC14.64□□□□□ -0.07
BEST3Q8N1M1 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms