Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
USP54Q70EL1 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP54Q70EL1 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP54Q70EL1 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
USP54Q70EL1 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP54Q70EL1 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
USP54Q70EL1 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC20.39■□□□□ 0.86
USP54Q70EL1 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
USP54Q70EL1 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
USP54Q70EL1 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
USP54Q70EL1 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC20.39■□□□□ 0.86
USP54Q70EL1 FXNP2-201ENST00000411625 547 ntBASIC20.39■□□□□ 0.86
USP54Q70EL1 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC20.39■□□□□ 0.86
USP54Q70EL1 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC20.39■□□□□ 0.86
USP54Q70EL1 MDH2-205ENST00000461263 648 ntTSL 2 BASIC20.39■□□□□ 0.86
USP54Q70EL1 PARP8-206ENST00000503665 572 ntTSL 4 BASIC20.39■□□□□ 0.86
USP54Q70EL1 KLK3-207ENST00000595952 969 ntTSL 3 BASIC20.39■□□□□ 0.86
USP54Q70EL1 AL162426.1-201ENST00000624141 743 ntBASIC20.39■□□□□ 0.86
USP54Q70EL1 CDK7-214ENST00000626796 358 ntTSL 5 BASIC20.39■□□□□ 0.86
USP54Q70EL1 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC20.39■□□□□ 0.86
USP54Q70EL1 BANP-204ENST00000393208 2283 ntTSL 2 BASIC20.39■□□□□ 0.85
USP54Q70EL1 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP54Q70EL1 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP54Q70EL1 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP54Q70EL1 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP54Q70EL1 AL662844.4-201ENST00000606367 2838 ntBASIC20.39■□□□□ 0.85
USP54Q70EL1 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
USP54Q70EL1 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP54Q70EL1 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP54Q70EL1 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP54Q70EL1 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP54Q70EL1 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
USP54Q70EL1 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP54Q70EL1 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP54Q70EL1 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP54Q70EL1 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
USP54Q70EL1 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
USP54Q70EL1 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC20.38■□□□□ 0.85
USP54Q70EL1 PDIA3P2-201ENST00000428073 158 ntBASIC20.38■□□□□ 0.85
USP54Q70EL1 OARD1-204ENST00000464633 717 ntTSL 2 BASIC20.38■□□□□ 0.85
USP54Q70EL1 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC20.38■□□□□ 0.85
USP54Q70EL1 NUP210P1-202ENST00000504322 710 ntBASIC20.38■□□□□ 0.85
USP54Q70EL1 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC20.38■□□□□ 0.85
USP54Q70EL1 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC20.38■□□□□ 0.85
USP54Q70EL1 AC103988.2-201ENST00000561804 725 ntBASIC20.38■□□□□ 0.85
USP54Q70EL1 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC20.38■□□□□ 0.85
USP54Q70EL1 AC091544.8-201ENST00000619490 361 ntBASIC20.38■□□□□ 0.85
USP54Q70EL1 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
USP54Q70EL1 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
USP54Q70EL1 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC20.38■□□□□ 0.85
USP54Q70EL1 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC20.38■□□□□ 0.85
USP54Q70EL1 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
USP54Q70EL1 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
USP54Q70EL1 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC20.38■□□□□ 0.85
USP54Q70EL1 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC20.38■□□□□ 0.85
USP54Q70EL1 CRCP-204ENST00000398684 492 ntTSL 2 BASIC20.38■□□□□ 0.85
USP54Q70EL1 PARVG-202ENST00000415224 999 ntTSL 2 BASIC20.38■□□□□ 0.85
USP54Q70EL1 FNTAP2-201ENST00000430308 634 ntBASIC20.38■□□□□ 0.85
USP54Q70EL1 AC116345.2-201ENST00000512837 523 ntBASIC20.38■□□□□ 0.85
USP54Q70EL1 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC20.38■□□□□ 0.85
USP54Q70EL1 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC20.38■□□□□ 0.85
USP54Q70EL1 AC016629.1-201ENST00000596579 586 ntBASIC20.38■□□□□ 0.85
USP54Q70EL1 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP54Q70EL1 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP54Q70EL1 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP54Q70EL1 SHC1P1-201ENST00000425230 1745 ntBASIC20.37■□□□□ 0.85
USP54Q70EL1 PKD1P6-201ENST00000343738 4769 ntBASIC20.37■□□□□ 0.85
USP54Q70EL1 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP54Q70EL1 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP54Q70EL1 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC20.37■□□□□ 0.85
USP54Q70EL1 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC20.37■□□□□ 0.85
USP54Q70EL1 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP54Q70EL1 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP54Q70EL1 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
USP54Q70EL1 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC20.37■□□□□ 0.85
USP54Q70EL1 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP54Q70EL1 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
USP54Q70EL1 RERG-205ENST00000537647 935 ntTSL 2 BASIC20.37■□□□□ 0.85
USP54Q70EL1 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC20.37■□□□□ 0.85
USP54Q70EL1 FGFR3P5-201ENST00000564496 886 ntBASIC20.37■□□□□ 0.85
USP54Q70EL1 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms