Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.95□□□□□ -0.02
LIM2P55344 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.95□□□□□ -0.02
LIM2P55344 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
LIM2P55344 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.95□□□□□ -0.02
LIM2P55344 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
LIM2P55344 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.94□□□□□ -0.02
LIM2P55344 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.94□□□□□ -0.02
LIM2P55344 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.94□□□□□ -0.02
LIM2P55344 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.94□□□□□ -0.02
LIM2P55344 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.94□□□□□ -0.02
LIM2P55344 AC092127.1-201ENST00000567093 3455 ntBASIC14.94□□□□□ -0.02
LIM2P55344 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
LIM2P55344 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
LIM2P55344 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.94□□□□□ -0.02
LIM2P55344 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.94□□□□□ -0.02
LIM2P55344 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
LIM2P55344 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.94□□□□□ -0.02
LIM2P55344 RNA5SP421-201ENST00000516864 134 ntBASIC14.94□□□□□ -0.02
LIM2P55344 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.94□□□□□ -0.02
LIM2P55344 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.94□□□□□ -0.02
LIM2P55344 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.94□□□□□ -0.02
LIM2P55344 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.94□□□□□ -0.02
LIM2P55344 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.94□□□□□ -0.02
LIM2P55344 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
LIM2P55344 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.94□□□□□ -0.02
LIM2P55344 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 AP002414.2-201ENST00000591780 3365 ntBASIC14.94□□□□□ -0.02
LIM2P55344 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.94□□□□□ -0.02
LIM2P55344 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.94□□□□□ -0.02
LIM2P55344 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LIM2P55344 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
LIM2P55344 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
LIM2P55344 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.93□□□□□ -0.02
LIM2P55344 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
LIM2P55344 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
LIM2P55344 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
LIM2P55344 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.93□□□□□ -0.02
LIM2P55344 AC023157.3-201ENST00000619086 2088 ntBASIC14.93□□□□□ -0.02
LIM2P55344 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.93□□□□□ -0.02
LIM2P55344 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.93□□□□□ -0.02
LIM2P55344 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
LIM2P55344 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.93□□□□□ -0.02
LIM2P55344 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.93□□□□□ -0.02
LIM2P55344 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.93□□□□□ -0.02
LIM2P55344 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.93□□□□□ -0.02
LIM2P55344 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.93□□□□□ -0.02
LIM2P55344 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.93□□□□□ -0.02
LIM2P55344 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.93□□□□□ -0.02
LIM2P55344 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
LIM2P55344 AC008738.7-201ENST00000609744 511 ntBASIC14.93□□□□□ -0.02
LIM2P55344 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.93□□□□□ -0.02
LIM2P55344 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 BTBD7P1-201ENST00000447253 1453 ntBASIC14.93□□□□□ -0.02
LIM2P55344 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.93□□□□□ -0.02
LIM2P55344 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
LIM2P55344 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
LIM2P55344 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.93□□□□□ -0.02
LIM2P55344 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIM2P55344 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
LIM2P55344 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.93□□□□□ -0.02
LIM2P55344 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.92□□□□□ -0.02
LIM2P55344 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.92□□□□□ -0.02
LIM2P55344 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.92□□□□□ -0.02
LIM2P55344 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms