Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC13.9□□□□□ -0.18
CX3CR1P49238 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CX3CR1P49238 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC13.9□□□□□ -0.18
CX3CR1P49238 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC13.9□□□□□ -0.18
CX3CR1P49238 ELP6-209ENST00000446787 894 ntTSL 3 BASIC13.9□□□□□ -0.18
CX3CR1P49238 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.9□□□□□ -0.18
CX3CR1P49238 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
CX3CR1P49238 TSFM-210ENST00000550559 897 ntTSL 5 BASIC13.9□□□□□ -0.18
CX3CR1P49238 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC13.9□□□□□ -0.18
CX3CR1P49238 COQ9-214ENST00000567933 882 ntTSL 3 BASIC13.9□□□□□ -0.18
CX3CR1P49238 MIR4313-201ENST00000580760 101 ntBASIC13.9□□□□□ -0.18
CX3CR1P49238 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC13.9□□□□□ -0.18
CX3CR1P49238 AC022145.2-201ENST00000598203 171 ntBASIC13.9□□□□□ -0.18
CX3CR1P49238 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC13.9□□□□□ -0.18
CX3CR1P49238 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC13.9□□□□□ -0.18
CX3CR1P49238 AC105339.1-204ENST00000636249 355 ntBASIC13.9□□□□□ -0.18
CX3CR1P49238 AC084121.4-201ENST00000641598 221 ntBASIC13.9□□□□□ -0.18
CX3CR1P49238 AF228730.8-201ENST00000642140 221 ntBASIC13.9□□□□□ -0.18
CX3CR1P49238 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC13.9□□□□□ -0.18
CX3CR1P49238 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 PGR-210ENST00000619228 3038 ntTSL 5 BASIC13.9□□□□□ -0.18
CX3CR1P49238 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC13.9□□□□□ -0.18
CX3CR1P49238 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CR1P49238 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
CX3CR1P49238 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC13.9□□□□□ -0.18
CX3CR1P49238 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CX3CR1P49238 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CX3CR1P49238 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
CX3CR1P49238 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC13.89□□□□□ -0.19
CX3CR1P49238 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CX3CR1P49238 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.89□□□□□ -0.19
CX3CR1P49238 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC13.89□□□□□ -0.19
CX3CR1P49238 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CX3CR1P49238 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC13.89□□□□□ -0.19
CX3CR1P49238 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
CX3CR1P49238 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 RAC2-202ENST00000401529 569 ntTSL 4 BASIC13.89□□□□□ -0.19
CX3CR1P49238 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC13.89□□□□□ -0.19
CX3CR1P49238 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC13.89□□□□□ -0.19
CX3CR1P49238 KRT18P32-201ENST00000424695 1287 ntBASIC13.89□□□□□ -0.19
CX3CR1P49238 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC13.89□□□□□ -0.19
CX3CR1P49238 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC13.89□□□□□ -0.19
CX3CR1P49238 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC13.89□□□□□ -0.19
CX3CR1P49238 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC13.89□□□□□ -0.19
CX3CR1P49238 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.89□□□□□ -0.19
CX3CR1P49238 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC13.89□□□□□ -0.19
CX3CR1P49238 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.89□□□□□ -0.19
CX3CR1P49238 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CX3CR1P49238 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CX3CR1P49238 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CR1P49238 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CX3CR1P49238 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CX3CR1P49238 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CX3CR1P49238 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CR1P49238 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CR1P49238 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.88□□□□□ -0.19
CX3CR1P49238 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CR1P49238 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
CX3CR1P49238 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CR1P49238 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms