Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.09■□□□□ 0.17
SLC6A4P31645 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.09■□□□□ 0.17
SLC6A4P31645 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SLC6A4P31645 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.08■□□□□ 0.17
SLC6A4P31645 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SLC6A4P31645 AC008741.2-201ENST00000612792 3115 ntBASIC16.08■□□□□ 0.17
SLC6A4P31645 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SLC6A4P31645 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.08■□□□□ 0.17
SLC6A4P31645 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
SLC6A4P31645 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SLC6A4P31645 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.08■□□□□ 0.16
SLC6A4P31645 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.08■□□□□ 0.16
SLC6A4P31645 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
SLC6A4P31645 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.08■□□□□ 0.16
SLC6A4P31645 GIMAP3P-201ENST00000495150 836 ntBASIC16.08■□□□□ 0.16
SLC6A4P31645 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.08■□□□□ 0.16
SLC6A4P31645 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.08■□□□□ 0.16
SLC6A4P31645 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.08■□□□□ 0.16
SLC6A4P31645 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.08■□□□□ 0.16
SLC6A4P31645 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.08■□□□□ 0.16
SLC6A4P31645 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.08■□□□□ 0.16
SLC6A4P31645 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.08■□□□□ 0.16
SLC6A4P31645 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 AC092850.2-201ENST00000623821 2697 ntBASIC16.08■□□□□ 0.16
SLC6A4P31645 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.08■□□□□ 0.16
SLC6A4P31645 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SLC6A4P31645 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SLC6A4P31645 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
SLC6A4P31645 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
SLC6A4P31645 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SLC6A4P31645 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC16.07■□□□□ 0.16
SLC6A4P31645 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 TMEM14DP-201ENST00000422205 345 ntBASIC16.07■□□□□ 0.16
SLC6A4P31645 AC134915.1-201ENST00000426461 574 ntBASIC16.07■□□□□ 0.16
SLC6A4P31645 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
SLC6A4P31645 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.07■□□□□ 0.16
SLC6A4P31645 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.07■□□□□ 0.16
SLC6A4P31645 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.07■□□□□ 0.16
SLC6A4P31645 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.07■□□□□ 0.16
SLC6A4P31645 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SLC6A4P31645 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
SLC6A4P31645 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.07■□□□□ 0.16
SLC6A4P31645 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
SLC6A4P31645 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.07■□□□□ 0.16
SLC6A4P31645 AC120045.2-201ENST00000567334 178 ntBASIC16.07■□□□□ 0.16
SLC6A4P31645 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.07■□□□□ 0.16
SLC6A4P31645 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.07■□□□□ 0.16
SLC6A4P31645 AC133539.2-201ENST00000604757 467 ntBASIC16.07■□□□□ 0.16
SLC6A4P31645 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.07■□□□□ 0.16
SLC6A4P31645 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.07■□□□□ 0.16
SLC6A4P31645 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.07■□□□□ 0.16
SLC6A4P31645 DRD5P1-201ENST00000456605 1438 ntBASIC16.07■□□□□ 0.16
SLC6A4P31645 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.07■□□□□ 0.16
SLC6A4P31645 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.07■□□□□ 0.16
SLC6A4P31645 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SLC6A4P31645 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.07■□□□□ 0.16
SLC6A4P31645 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.07■□□□□ 0.16
SLC6A4P31645 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
SLC6A4P31645 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.07■□□□□ 0.16
SLC6A4P31645 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
SLC6A4P31645 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SLC6A4P31645 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms