Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB1P09429 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGB1P09429 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.56■□□□□ 0.56
HMGB1P09429 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB1P09429 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.56■□□□□ 0.56
HMGB1P09429 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.56■□□□□ 0.56
HMGB1P09429 AL590560.3-201ENST00000623350 461 ntBASIC18.56■□□□□ 0.56
HMGB1P09429 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB1P09429 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
HMGB1P09429 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.56■□□□□ 0.56
HMGB1P09429 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB1P09429 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.56■□□□□ 0.56
HMGB1P09429 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
HMGB1P09429 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB1P09429 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.56■□□□□ 0.56
HMGB1P09429 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC18.56■□□□□ 0.56
HMGB1P09429 DEK-201ENST00000244776 1441 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGB1P09429 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGB1P09429 AC100757.3-201ENST00000622361 1406 ntBASIC18.56■□□□□ 0.56
HMGB1P09429 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGB1P09429 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB1P09429 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGB1P09429 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.55■□□□□ 0.56
HMGB1P09429 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
HMGB1P09429 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
HMGB1P09429 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGB1P09429 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
HMGB1P09429 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC18.55■□□□□ 0.56
HMGB1P09429 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
HMGB1P09429 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.55■□□□□ 0.56
HMGB1P09429 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGB1P09429 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 AL133267.1-201ENST00000398220 340 ntBASIC18.55■□□□□ 0.56
HMGB1P09429 MIR943-201ENST00000401286 94 ntBASIC18.55■□□□□ 0.56
HMGB1P09429 TREML5P-201ENST00000421694 576 ntBASIC18.55■□□□□ 0.56
HMGB1P09429 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.55■□□□□ 0.56
HMGB1P09429 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.55■□□□□ 0.56
HMGB1P09429 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.55■□□□□ 0.56
HMGB1P09429 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC18.55■□□□□ 0.56
HMGB1P09429 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.55■□□□□ 0.56
HMGB1P09429 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGB1P09429 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.55■□□□□ 0.56
HMGB1P09429 AL844908.2-201ENST00000609461 460 ntBASIC18.55■□□□□ 0.56
HMGB1P09429 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
HMGB1P09429 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGB1P09429 HYMAI-201ENST00000635591 3347 ntBASIC18.55■□□□□ 0.56
HMGB1P09429 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
HMGB1P09429 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 AC084364.1-201ENST00000551967 1556 ntBASIC18.55■□□□□ 0.56
HMGB1P09429 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB1P09429 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
HMGB1P09429 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC18.54■□□□□ 0.56
HMGB1P09429 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
HMGB1P09429 AC006058.4-201ENST00000624016 1670 ntBASIC18.54■□□□□ 0.56
HMGB1P09429 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
HMGB1P09429 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
HMGB1P09429 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGB1P09429 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGB1P09429 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.54■□□□□ 0.56
HMGB1P09429 TOMM22P5-201ENST00000416399 439 ntBASIC18.54■□□□□ 0.56
HMGB1P09429 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC18.54■□□□□ 0.56
HMGB1P09429 AC241585.1-201ENST00000433527 519 ntBASIC18.54■□□□□ 0.56
HMGB1P09429 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
HMGB1P09429 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HMGB1P09429 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.54■□□□□ 0.56
HMGB1P09429 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.54■□□□□ 0.56
HMGB1P09429 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.54■□□□□ 0.56
HMGB1P09429 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGB1P09429 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGB1P09429 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
HMGB1P09429 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HMGB1P09429 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
HMGB1P09429 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
HMGB1P09429 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGB1P09429 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.54■□□□□ 0.56
HMGB1P09429 TK1-203ENST00000588734 1681 ntTSL 2 BASIC18.54■□□□□ 0.56
HMGB1P09429 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGB1P09429 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.53■□□□□ 0.56
HMGB1P09429 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms