Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC12.25□□□□□ -0.45
LINC01558Q9Y6Z2 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC01558Q9Y6Z2 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC12.25□□□□□ -0.45
LINC01558Q9Y6Z2 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
LINC01558Q9Y6Z2 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC12.25□□□□□ -0.45
LINC01558Q9Y6Z2 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC12.25□□□□□ -0.45
LINC01558Q9Y6Z2 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC01558Q9Y6Z2 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC01558Q9Y6Z2 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC01558Q9Y6Z2 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC01558Q9Y6Z2 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 AL391422.3-201ENST00000603791 2761 ntBASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC01558Q9Y6Z2 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LINC01558Q9Y6Z2 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC01558Q9Y6Z2 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC01558Q9Y6Z2 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
LINC01558Q9Y6Z2 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC01558Q9Y6Z2 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC12.22□□□□□ -0.45
LINC01558Q9Y6Z2 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC01558Q9Y6Z2 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC01558Q9Y6Z2 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC01558Q9Y6Z2 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC01558Q9Y6Z2 ECEL1P1-201ENST00000373592 1742 ntBASIC12.22□□□□□ -0.45
LINC01558Q9Y6Z2 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
LINC01558Q9Y6Z2 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC01558Q9Y6Z2 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC01558Q9Y6Z2 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC01558Q9Y6Z2 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
LINC01558Q9Y6Z2 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
LINC01558Q9Y6Z2 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
LINC01558Q9Y6Z2 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC12.21□□□□□ -0.45
LINC01558Q9Y6Z2 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC01558Q9Y6Z2 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC01558Q9Y6Z2 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC01558Q9Y6Z2 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
LINC01558Q9Y6Z2 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC01558Q9Y6Z2 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC01558Q9Y6Z2 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
LINC01558Q9Y6Z2 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
LINC01558Q9Y6Z2 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
LINC01558Q9Y6Z2 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC01558Q9Y6Z2 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC01558Q9Y6Z2 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC01558Q9Y6Z2 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC01558Q9Y6Z2 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC01558Q9Y6Z2 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC01558Q9Y6Z2 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC01558Q9Y6Z2 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC12.2□□□□□ -0.46
LINC01558Q9Y6Z2 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
LINC01558Q9Y6Z2 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC01558Q9Y6Z2 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC01558Q9Y6Z2 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC01558Q9Y6Z2 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC01558Q9Y6Z2 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC01558Q9Y6Z2 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC01558Q9Y6Z2 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
LINC01558Q9Y6Z2 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC01558Q9Y6Z2 AC010864.1-201ENST00000609407 1511 ntBASIC12.19□□□□□ -0.46
LINC01558Q9Y6Z2 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC01558Q9Y6Z2 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC12.19□□□□□ -0.46
LINC01558Q9Y6Z2 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
LINC01558Q9Y6Z2 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC12.19□□□□□ -0.46
LINC01558Q9Y6Z2 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
LINC01558Q9Y6Z2 AC018358.1-201ENST00000631079 1402 ntBASIC12.19□□□□□ -0.46
LINC01558Q9Y6Z2 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC01558Q9Y6Z2 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC01558Q9Y6Z2 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC01558Q9Y6Z2 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
LINC01558Q9Y6Z2 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
LINC01558Q9Y6Z2 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC01558Q9Y6Z2 LSR-203ENST00000360798 1963 ntTSL 2 BASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms