Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHGA1Q9Y5H4 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHGA1Q9Y5H4 LBH-205ENST00000407930 756 ntTSL 2 BASIC22.57■■□□□ 1.2
PCDHGA1Q9Y5H4 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHGA1Q9Y5H4 DUX4L19-201ENST00000557448 1267 ntBASIC22.57■■□□□ 1.2
PCDHGA1Q9Y5H4 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC22.57■■□□□ 1.2
PCDHGA1Q9Y5H4 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHGA1Q9Y5H4 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHGA1Q9Y5H4 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHGA1Q9Y5H4 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
PCDHGA1Q9Y5H4 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PCDHGA1Q9Y5H4 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PCDHGA1Q9Y5H4 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
PCDHGA1Q9Y5H4 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
PCDHGA1Q9Y5H4 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCDHGA1Q9Y5H4 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCDHGA1Q9Y5H4 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC22.55■■□□□ 1.2
PCDHGA1Q9Y5H4 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC22.55■■□□□ 1.2
PCDHGA1Q9Y5H4 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCDHGA1Q9Y5H4 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCDHGA1Q9Y5H4 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
PCDHGA1Q9Y5H4 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC22.55■■□□□ 1.2
PCDHGA1Q9Y5H4 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC22.55■■□□□ 1.2
PCDHGA1Q9Y5H4 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCDHGA1Q9Y5H4 GATM-206ENST00000558336 1522 ntTSL 2 BASIC22.55■■□□□ 1.2
PCDHGA1Q9Y5H4 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
PCDHGA1Q9Y5H4 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PCDHGA1Q9Y5H4 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PCDHGA1Q9Y5H4 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PCDHGA1Q9Y5H4 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
PCDHGA1Q9Y5H4 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
PCDHGA1Q9Y5H4 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.54■■□□□ 1.2
PCDHGA1Q9Y5H4 SHF-208ENST00000560734 1731 ntTSL 3 BASIC22.54■■□□□ 1.2
PCDHGA1Q9Y5H4 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCDHGA1Q9Y5H4 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC22.53■■□□□ 1.2
PCDHGA1Q9Y5H4 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCDHGA1Q9Y5H4 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.53■■□□□ 1.2
PCDHGA1Q9Y5H4 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC22.53■■□□□ 1.2
PCDHGA1Q9Y5H4 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC22.53■■□□□ 1.2
PCDHGA1Q9Y5H4 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC22.53■■□□□ 1.2
PCDHGA1Q9Y5H4 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCDHGA1Q9Y5H4 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.53■■□□□ 1.2
PCDHGA1Q9Y5H4 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC22.53■■□□□ 1.2
PCDHGA1Q9Y5H4 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
PCDHGA1Q9Y5H4 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHGA1Q9Y5H4 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHGA1Q9Y5H4 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC22.52■■□□□ 1.2
PCDHGA1Q9Y5H4 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHGA1Q9Y5H4 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHGA1Q9Y5H4 AC105265.2-201ENST00000467189 838 ntBASIC22.52■■□□□ 1.2
PCDHGA1Q9Y5H4 AL136967.2-201ENST00000623968 743 ntBASIC22.52■■□□□ 1.2
PCDHGA1Q9Y5H4 SF1-220ENST00000626028 704 ntTSL 2 BASIC22.52■■□□□ 1.2
PCDHGA1Q9Y5H4 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHGA1Q9Y5H4 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA1Q9Y5H4 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC22.51■■□□□ 1.19
PCDHGA1Q9Y5H4 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA1Q9Y5H4 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC22.51■■□□□ 1.19
PCDHGA1Q9Y5H4 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.51■■□□□ 1.19
PCDHGA1Q9Y5H4 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
PCDHGA1Q9Y5H4 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA1Q9Y5H4 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
PCDHGA1Q9Y5H4 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDHGA1Q9Y5H4 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC22.5■■□□□ 1.19
PCDHGA1Q9Y5H4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC22.5■■□□□ 1.19
PCDHGA1Q9Y5H4 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC22.5■■□□□ 1.19
PCDHGA1Q9Y5H4 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC22.5■■□□□ 1.19
PCDHGA1Q9Y5H4 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
PCDHGA1Q9Y5H4 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA1Q9Y5H4 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
PCDHGA1Q9Y5H4 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA1Q9Y5H4 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA1Q9Y5H4 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA1Q9Y5H4 MIR939-201ENST00000401314 82 ntBASIC22.49■■□□□ 1.19
PCDHGA1Q9Y5H4 AF213884.3-201ENST00000563833 479 ntBASIC22.49■■□□□ 1.19
PCDHGA1Q9Y5H4 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC22.49■■□□□ 1.19
PCDHGA1Q9Y5H4 AC092171.4-201ENST00000609130 632 ntBASIC22.49■■□□□ 1.19
PCDHGA1Q9Y5H4 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA1Q9Y5H4 GRAMD4P4-201ENST00000613563 1115 ntBASIC22.49■■□□□ 1.19
PCDHGA1Q9Y5H4 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA1Q9Y5H4 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.48■■□□□ 1.19
PCDHGA1Q9Y5H4 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
PCDHGA1Q9Y5H4 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA1Q9Y5H4 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA1Q9Y5H4 AC004448.1-201ENST00000458332 883 ntBASIC22.48■■□□□ 1.19
PCDHGA1Q9Y5H4 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA1Q9Y5H4 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA1Q9Y5H4 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
PCDHGA1Q9Y5H4 AC091305.1-201ENST00000479476 895 ntBASIC22.47■■□□□ 1.19
PCDHGA1Q9Y5H4 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.47■■□□□ 1.19
PCDHGA1Q9Y5H4 MIR6821-201ENST00000617625 74 ntBASIC22.47■■□□□ 1.19
PCDHGA1Q9Y5H4 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHGA1Q9Y5H4 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHGA1Q9Y5H4 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHGA1Q9Y5H4 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHGA1Q9Y5H4 PARL-206ENST00000435888 1098 ntTSL 5 BASIC22.46■■□□□ 1.19
PCDHGA1Q9Y5H4 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
PCDHGA1Q9Y5H4 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.46■■□□□ 1.19
PCDHGA1Q9Y5H4 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC22.46■■□□□ 1.19
PCDHGA1Q9Y5H4 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHGA1Q9Y5H4 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms