Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC18.84■□□□□ 0.61
FOXA2Q9Y261 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC18.84■□□□□ 0.61
FOXA2Q9Y261 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
FOXA2Q9Y261 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
FOXA2Q9Y261 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
FOXA2Q9Y261 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
FOXA2Q9Y261 LTK-203ENST00000453182 2412 ntTSL 2 BASIC18.83■□□□□ 0.61
FOXA2Q9Y261 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
FOXA2Q9Y261 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
FOXA2Q9Y261 AC012354.3-201ENST00000623734 483 ntBASIC18.83■□□□□ 0.6
FOXA2Q9Y261 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
FOXA2Q9Y261 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
FOXA2Q9Y261 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.83■□□□□ 0.6
FOXA2Q9Y261 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
FOXA2Q9Y261 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
FOXA2Q9Y261 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
FOXA2Q9Y261 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
FOXA2Q9Y261 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA2Q9Y261 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA2Q9Y261 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA2Q9Y261 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC18.82■□□□□ 0.6
FOXA2Q9Y261 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA2Q9Y261 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
FOXA2Q9Y261 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
FOXA2Q9Y261 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.81■□□□□ 0.6
FOXA2Q9Y261 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.81■□□□□ 0.6
FOXA2Q9Y261 SPCS2P3-201ENST00000500401 656 ntBASIC18.81■□□□□ 0.6
FOXA2Q9Y261 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC18.81■□□□□ 0.6
FOXA2Q9Y261 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC18.81■□□□□ 0.6
FOXA2Q9Y261 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA2Q9Y261 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA2Q9Y261 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
FOXA2Q9Y261 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA2Q9Y261 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA2Q9Y261 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA2Q9Y261 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA2Q9Y261 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA2Q9Y261 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA2Q9Y261 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA2Q9Y261 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC18.79■□□□□ 0.6
FOXA2Q9Y261 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC18.79■□□□□ 0.6
FOXA2Q9Y261 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC18.79■□□□□ 0.6
FOXA2Q9Y261 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
FOXA2Q9Y261 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXA2Q9Y261 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
FOXA2Q9Y261 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA2Q9Y261 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
FOXA2Q9Y261 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA2Q9Y261 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA2Q9Y261 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC18.78■□□□□ 0.6
FOXA2Q9Y261 ATP5G2P3-201ENST00000429083 425 ntBASIC18.78■□□□□ 0.6
FOXA2Q9Y261 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA2Q9Y261 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA2Q9Y261 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA2Q9Y261 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC18.78■□□□□ 0.6
FOXA2Q9Y261 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA2Q9Y261 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA2Q9Y261 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA2Q9Y261 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA2Q9Y261 TSPY13P-201ENST00000338964 914 ntBASIC18.77■□□□□ 0.6
FOXA2Q9Y261 IDNK-203ENST00000405990 629 ntTSL 2 BASIC18.77■□□□□ 0.6
FOXA2Q9Y261 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC18.77■□□□□ 0.6
FOXA2Q9Y261 AC004987.1-201ENST00000428627 508 ntBASIC18.77■□□□□ 0.6
FOXA2Q9Y261 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC18.77■□□□□ 0.6
FOXA2Q9Y261 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC18.77■□□□□ 0.6
FOXA2Q9Y261 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC18.77■□□□□ 0.6
FOXA2Q9Y261 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA2Q9Y261 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA2Q9Y261 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA2Q9Y261 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
FOXA2Q9Y261 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA2Q9Y261 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA2Q9Y261 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.76■□□□□ 0.59
FOXA2Q9Y261 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA2Q9Y261 HYI-210ENST00000486909 905 ntTSL 5 BASIC18.76■□□□□ 0.59
FOXA2Q9Y261 DUX4L18-201ENST00000553347 1267 ntBASIC18.76■□□□□ 0.59
FOXA2Q9Y261 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC18.76■□□□□ 0.59
FOXA2Q9Y261 AC004812.2-201ENST00000611079 2094 ntBASIC18.76■□□□□ 0.59
FOXA2Q9Y261 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA2Q9Y261 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA2Q9Y261 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC18.75■□□□□ 0.59
FOXA2Q9Y261 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
FOXA2Q9Y261 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA2Q9Y261 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA2Q9Y261 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA2Q9Y261 FOXO3B-201ENST00000395675 1928 ntBASIC18.75■□□□□ 0.59
FOXA2Q9Y261 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA2Q9Y261 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
FOXA2Q9Y261 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA2Q9Y261 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA2Q9Y261 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA2Q9Y261 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA2Q9Y261 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA2Q9Y261 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA2Q9Y261 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
FOXA2Q9Y261 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA2Q9Y261 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA2Q9Y261 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA2Q9Y261 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC18.74■□□□□ 0.59
FOXA2Q9Y261 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms