Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
DDX41Q9UJV9 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
DDX41Q9UJV9 AC145676.1-201ENST00000514988 2004 ntBASIC26.78■■□□□ 1.88
DDX41Q9UJV9 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
DDX41Q9UJV9 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
DDX41Q9UJV9 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
DDX41Q9UJV9 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC26.77■■□□□ 1.88
DDX41Q9UJV9 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
DDX41Q9UJV9 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC26.77■■□□□ 1.88
DDX41Q9UJV9 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC26.77■■□□□ 1.88
DDX41Q9UJV9 UNC93B8-201ENST00000511903 705 ntBASIC26.77■■□□□ 1.88
DDX41Q9UJV9 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
DDX41Q9UJV9 MIR4281-201ENST00000580852 62 ntBASIC26.77■■□□□ 1.88
DDX41Q9UJV9 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
DDX41Q9UJV9 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
DDX41Q9UJV9 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC26.76■■□□□ 1.87
DDX41Q9UJV9 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC26.76■■□□□ 1.87
DDX41Q9UJV9 GRAMD4P7-201ENST00000578182 1232 ntBASIC26.76■■□□□ 1.87
DDX41Q9UJV9 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
DDX41Q9UJV9 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC26.76■■□□□ 1.87
DDX41Q9UJV9 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.76■■□□□ 1.87
DDX41Q9UJV9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
DDX41Q9UJV9 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC26.75■■□□□ 1.87
DDX41Q9UJV9 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
DDX41Q9UJV9 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
DDX41Q9UJV9 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
DDX41Q9UJV9 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
DDX41Q9UJV9 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
DDX41Q9UJV9 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC26.74■■□□□ 1.87
DDX41Q9UJV9 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
DDX41Q9UJV9 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC26.73■■□□□ 1.87
DDX41Q9UJV9 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC26.73■■□□□ 1.87
DDX41Q9UJV9 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
DDX41Q9UJV9 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
DDX41Q9UJV9 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
DDX41Q9UJV9 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC26.72■■□□□ 1.87
DDX41Q9UJV9 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
DDX41Q9UJV9 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.72■■□□□ 1.87
DDX41Q9UJV9 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
DDX41Q9UJV9 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC26.72■■□□□ 1.87
DDX41Q9UJV9 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC26.72■■□□□ 1.87
DDX41Q9UJV9 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC26.71■■□□□ 1.87
DDX41Q9UJV9 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
DDX41Q9UJV9 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
DDX41Q9UJV9 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC26.71■■□□□ 1.87
DDX41Q9UJV9 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
DDX41Q9UJV9 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC26.71■■□□□ 1.87
DDX41Q9UJV9 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.71■■□□□ 1.87
DDX41Q9UJV9 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC26.71■■□□□ 1.87
DDX41Q9UJV9 AC011551.1-201ENST00000614101 683 ntBASIC26.71■■□□□ 1.87
DDX41Q9UJV9 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
DDX41Q9UJV9 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC26.71■■□□□ 1.87
DDX41Q9UJV9 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
DDX41Q9UJV9 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
DDX41Q9UJV9 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
DDX41Q9UJV9 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC26.7■■□□□ 1.86
DDX41Q9UJV9 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.7■■□□□ 1.86
DDX41Q9UJV9 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
DDX41Q9UJV9 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC26.7■■□□□ 1.86
DDX41Q9UJV9 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
DDX41Q9UJV9 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
DDX41Q9UJV9 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
DDX41Q9UJV9 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC26.69■■□□□ 1.86
DDX41Q9UJV9 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC26.69■■□□□ 1.86
DDX41Q9UJV9 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC26.69■■□□□ 1.86
DDX41Q9UJV9 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
DDX41Q9UJV9 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
DDX41Q9UJV9 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.69■■□□□ 1.86
DDX41Q9UJV9 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC26.69■■□□□ 1.86
DDX41Q9UJV9 AC092028.1-203ENST00000608262 953 ntBASIC26.69■■□□□ 1.86
DDX41Q9UJV9 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.69■■□□□ 1.86
DDX41Q9UJV9 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
DDX41Q9UJV9 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC26.68■■□□□ 1.86
DDX41Q9UJV9 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
DDX41Q9UJV9 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC26.68■■□□□ 1.86
DDX41Q9UJV9 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC26.68■■□□□ 1.86
DDX41Q9UJV9 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
DDX41Q9UJV9 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
DDX41Q9UJV9 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
DDX41Q9UJV9 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
DDX41Q9UJV9 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
DDX41Q9UJV9 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
DDX41Q9UJV9 ERN1-208ENST00000606895 2068 ntBASIC26.67■■□□□ 1.86
DDX41Q9UJV9 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
DDX41Q9UJV9 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC26.67■■□□□ 1.86
DDX41Q9UJV9 MTURN-203ENST00000409688 843 ntTSL 2 BASIC26.67■■□□□ 1.86
DDX41Q9UJV9 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC26.67■■□□□ 1.86
DDX41Q9UJV9 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.67■■□□□ 1.86
DDX41Q9UJV9 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
DDX41Q9UJV9 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
DDX41Q9UJV9 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
DDX41Q9UJV9 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
DDX41Q9UJV9 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
DDX41Q9UJV9 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
DDX41Q9UJV9 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
DDX41Q9UJV9 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
DDX41Q9UJV9 KRT16P3-201ENST00000439127 1283 ntBASIC26.66■■□□□ 1.86
DDX41Q9UJV9 TSPY9P-201ENST00000440215 945 ntBASIC26.66■■□□□ 1.86
DDX41Q9UJV9 TSPY11P-201ENST00000442607 1045 ntBASIC26.66■■□□□ 1.86
DDX41Q9UJV9 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms