Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CLCF1Q9UBD9 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.85■□□□□ 0.93
CLCF1Q9UBD9 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLCF1Q9UBD9 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.84■□□□□ 0.93
CLCF1Q9UBD9 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLCF1Q9UBD9 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLCF1Q9UBD9 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.84■□□□□ 0.93
CLCF1Q9UBD9 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.84■□□□□ 0.93
CLCF1Q9UBD9 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLCF1Q9UBD9 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
CLCF1Q9UBD9 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.84■□□□□ 0.93
CLCF1Q9UBD9 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLCF1Q9UBD9 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLCF1Q9UBD9 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLCF1Q9UBD9 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLCF1Q9UBD9 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLCF1Q9UBD9 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.83■□□□□ 0.92
CLCF1Q9UBD9 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CLCF1Q9UBD9 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLCF1Q9UBD9 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
CLCF1Q9UBD9 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLCF1Q9UBD9 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLCF1Q9UBD9 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
CLCF1Q9UBD9 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.82■□□□□ 0.92
CLCF1Q9UBD9 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLCF1Q9UBD9 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLCF1Q9UBD9 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.81■□□□□ 0.92
CLCF1Q9UBD9 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLCF1Q9UBD9 SLC6A10P-202ENST00000431994 2058 ntBASIC20.81■□□□□ 0.92
CLCF1Q9UBD9 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLCF1Q9UBD9 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.81■□□□□ 0.92
CLCF1Q9UBD9 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CLCF1Q9UBD9 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
CLCF1Q9UBD9 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLCF1Q9UBD9 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLCF1Q9UBD9 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CLCF1Q9UBD9 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CLCF1Q9UBD9 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLCF1Q9UBD9 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.8■□□□□ 0.92
CLCF1Q9UBD9 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.8■□□□□ 0.92
CLCF1Q9UBD9 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLCF1Q9UBD9 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.8■□□□□ 0.92
CLCF1Q9UBD9 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLCF1Q9UBD9 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLCF1Q9UBD9 MTDHP2-201ENST00000601468 714 ntBASIC20.79■□□□□ 0.92
CLCF1Q9UBD9 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLCF1Q9UBD9 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.79■□□□□ 0.92
CLCF1Q9UBD9 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CLCF1Q9UBD9 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.78■□□□□ 0.92
CLCF1Q9UBD9 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLCF1Q9UBD9 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.78■□□□□ 0.92
CLCF1Q9UBD9 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CLCF1Q9UBD9 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLCF1Q9UBD9 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLCF1Q9UBD9 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.78■□□□□ 0.92
CLCF1Q9UBD9 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.78■□□□□ 0.92
CLCF1Q9UBD9 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.78■□□□□ 0.92
CLCF1Q9UBD9 AC010997.5-201ENST00000609182 354 ntBASIC20.78■□□□□ 0.92
CLCF1Q9UBD9 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.78■□□□□ 0.92
CLCF1Q9UBD9 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CLCF1Q9UBD9 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CLCF1Q9UBD9 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
CLCF1Q9UBD9 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLCF1Q9UBD9 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.77■□□□□ 0.92
CLCF1Q9UBD9 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.77■□□□□ 0.92
CLCF1Q9UBD9 MIR6089-201ENST00000616698 64 ntBASIC20.77■□□□□ 0.92
CLCF1Q9UBD9 CEBPA-AS1-201ENST00000592982 2198 ntBASIC20.77■□□□□ 0.92
CLCF1Q9UBD9 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLCF1Q9UBD9 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CLCF1Q9UBD9 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
CLCF1Q9UBD9 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.76■□□□□ 0.91
CLCF1Q9UBD9 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLCF1Q9UBD9 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CLCF1Q9UBD9 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CLCF1Q9UBD9 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLCF1Q9UBD9 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.75■□□□□ 0.91
CLCF1Q9UBD9 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.75■□□□□ 0.91
CLCF1Q9UBD9 SNX5-217ENST00000606557 1087 ntBASIC20.75■□□□□ 0.91
CLCF1Q9UBD9 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.75■□□□□ 0.91
CLCF1Q9UBD9 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.75■□□□□ 0.91
CLCF1Q9UBD9 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.74■□□□□ 0.91
CLCF1Q9UBD9 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CLCF1Q9UBD9 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.74■□□□□ 0.91
CLCF1Q9UBD9 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.74■□□□□ 0.91
CLCF1Q9UBD9 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLCF1Q9UBD9 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLCF1Q9UBD9 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CLCF1Q9UBD9 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLCF1Q9UBD9 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.73■□□□□ 0.91
CLCF1Q9UBD9 MIR6724-1-201ENST00000616420 92 ntBASIC20.73■□□□□ 0.91
CLCF1Q9UBD9 MIR6724-2-201ENST00000616483 92 ntBASIC20.73■□□□□ 0.91
CLCF1Q9UBD9 MIR6724-4-201ENST00000617390 92 ntBASIC20.73■□□□□ 0.91
CLCF1Q9UBD9 MIR6724-3-201ENST00000622482 92 ntBASIC20.73■□□□□ 0.91
CLCF1Q9UBD9 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLCF1Q9UBD9 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLCF1Q9UBD9 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
CLCF1Q9UBD9 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLCF1Q9UBD9 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLCF1Q9UBD9 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.72■□□□□ 0.91
CLCF1Q9UBD9 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms