Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
CHD8Q9HCK8 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHD8Q9HCK8 GXYLT1P5-201ENST00000614548 1189 ntBASIC22.28■■□□□ 1.16
CHD8Q9HCK8 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHD8Q9HCK8 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC22.27■■□□□ 1.16
CHD8Q9HCK8 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
CHD8Q9HCK8 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHD8Q9HCK8 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHD8Q9HCK8 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CHD8Q9HCK8 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHD8Q9HCK8 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHD8Q9HCK8 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHD8Q9HCK8 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHD8Q9HCK8 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.15
CHD8Q9HCK8 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC22.26■■□□□ 1.15
CHD8Q9HCK8 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CHD8Q9HCK8 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHD8Q9HCK8 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHD8Q9HCK8 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHD8Q9HCK8 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC22.25■■□□□ 1.15
CHD8Q9HCK8 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC22.25■■□□□ 1.15
CHD8Q9HCK8 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC22.25■■□□□ 1.15
CHD8Q9HCK8 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC22.25■■□□□ 1.15
CHD8Q9HCK8 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC22.25■■□□□ 1.15
CHD8Q9HCK8 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
CHD8Q9HCK8 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CHD8Q9HCK8 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC22.24■■□□□ 1.15
CHD8Q9HCK8 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CHD8Q9HCK8 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC22.24■■□□□ 1.15
CHD8Q9HCK8 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC22.24■■□□□ 1.15
CHD8Q9HCK8 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC22.24■■□□□ 1.15
CHD8Q9HCK8 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CHD8Q9HCK8 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CHD8Q9HCK8 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CHD8Q9HCK8 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC22.24■■□□□ 1.15
CHD8Q9HCK8 AL139393.2-201ENST00000608721 2025 ntBASIC22.23■■□□□ 1.15
CHD8Q9HCK8 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CHD8Q9HCK8 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CHD8Q9HCK8 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CHD8Q9HCK8 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC22.23■■□□□ 1.15
CHD8Q9HCK8 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC22.23■■□□□ 1.15
CHD8Q9HCK8 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CHD8Q9HCK8 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CHD8Q9HCK8 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
CHD8Q9HCK8 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
CHD8Q9HCK8 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC22.22■■□□□ 1.15
CHD8Q9HCK8 AC104771.1-201ENST00000603335 964 ntBASIC22.22■■□□□ 1.15
CHD8Q9HCK8 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC22.22■■□□□ 1.15
CHD8Q9HCK8 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CHD8Q9HCK8 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
CHD8Q9HCK8 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CHD8Q9HCK8 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC22.21■■□□□ 1.15
CHD8Q9HCK8 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CHD8Q9HCK8 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
CHD8Q9HCK8 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CHD8Q9HCK8 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CHD8Q9HCK8 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
CHD8Q9HCK8 PTCHD3P2-201ENST00000424937 1205 ntBASIC22.21■■□□□ 1.15
CHD8Q9HCK8 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
CHD8Q9HCK8 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CHD8Q9HCK8 AL138724.1-201ENST00000606771 1088 ntBASIC22.2■■□□□ 1.14
CHD8Q9HCK8 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CHD8Q9HCK8 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CHD8Q9HCK8 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CHD8Q9HCK8 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC22.2■■□□□ 1.14
CHD8Q9HCK8 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC22.2■■□□□ 1.14
CHD8Q9HCK8 SNAI3-AS1-204ENST00000567997 2048 ntBASIC22.2■■□□□ 1.14
CHD8Q9HCK8 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CHD8Q9HCK8 AC123595.1-201ENST00000440769 1046 ntBASIC22.19■■□□□ 1.14
CHD8Q9HCK8 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
CHD8Q9HCK8 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CHD8Q9HCK8 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC22.18■■□□□ 1.14
CHD8Q9HCK8 AC233992.3-201ENST00000607491 485 ntBASIC22.18■■□□□ 1.14
CHD8Q9HCK8 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CHD8Q9HCK8 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CHD8Q9HCK8 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CHD8Q9HCK8 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC22.18■■□□□ 1.14
CHD8Q9HCK8 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC22.18■■□□□ 1.14
CHD8Q9HCK8 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC22.18■■□□□ 1.14
CHD8Q9HCK8 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CHD8Q9HCK8 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
CHD8Q9HCK8 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CHD8Q9HCK8 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC22.17■■□□□ 1.14
CHD8Q9HCK8 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
CHD8Q9HCK8 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
CHD8Q9HCK8 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
CHD8Q9HCK8 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CHD8Q9HCK8 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CHD8Q9HCK8 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC22.16■■□□□ 1.14
CHD8Q9HCK8 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC22.16■■□□□ 1.14
CHD8Q9HCK8 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CHD8Q9HCK8 TSPY20P-201ENST00000450910 630 ntBASIC22.15■■□□□ 1.14
CHD8Q9HCK8 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
CHD8Q9HCK8 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CHD8Q9HCK8 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.15■■□□□ 1.14
CHD8Q9HCK8 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
CHD8Q9HCK8 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC22.15■■□□□ 1.14
CHD8Q9HCK8 ME3-201ENST00000323418 1068 ntTSL 5 BASIC22.14■■□□□ 1.14
CHD8Q9HCK8 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
CHD8Q9HCK8 MIR6722-201ENST00000617286 78 ntBASIC22.14■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms