Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDH9Q9HC56 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC24.1■■□□□ 1.45
PCDH9Q9HC56 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PCDH9Q9HC56 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PCDH9Q9HC56 AC004987.1-201ENST00000428627 508 ntBASIC24.1■■□□□ 1.45
PCDH9Q9HC56 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC24.1■■□□□ 1.45
PCDH9Q9HC56 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC24.1■■□□□ 1.45
PCDH9Q9HC56 AC012354.3-201ENST00000623734 483 ntBASIC24.1■■□□□ 1.45
PCDH9Q9HC56 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PCDH9Q9HC56 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC24.1■■□□□ 1.45
PCDH9Q9HC56 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PCDH9Q9HC56 IDNK-203ENST00000405990 629 ntTSL 2 BASIC24.09■■□□□ 1.45
PCDH9Q9HC56 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC24.09■■□□□ 1.45
PCDH9Q9HC56 ATP5G2P3-201ENST00000429083 425 ntBASIC24.09■■□□□ 1.45
PCDH9Q9HC56 DUX4L18-201ENST00000553347 1267 ntBASIC24.09■■□□□ 1.45
PCDH9Q9HC56 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC24.09■■□□□ 1.45
PCDH9Q9HC56 LTK-203ENST00000453182 2412 ntTSL 2 BASIC24.09■■□□□ 1.45
PCDH9Q9HC56 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDH9Q9HC56 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PCDH9Q9HC56 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
PCDH9Q9HC56 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
PCDH9Q9HC56 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.45
PCDH9Q9HC56 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDH9Q9HC56 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
PCDH9Q9HC56 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
PCDH9Q9HC56 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDH9Q9HC56 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC24.07■■□□□ 1.44
PCDH9Q9HC56 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC24.07■■□□□ 1.44
PCDH9Q9HC56 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
PCDH9Q9HC56 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC24.07■■□□□ 1.44
PCDH9Q9HC56 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
PCDH9Q9HC56 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
PCDH9Q9HC56 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDH9Q9HC56 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDH9Q9HC56 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDH9Q9HC56 TSPY13P-201ENST00000338964 914 ntBASIC24.06■■□□□ 1.44
PCDH9Q9HC56 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDH9Q9HC56 RPS2P7-201ENST00000447334 885 ntBASIC24.06■■□□□ 1.44
PCDH9Q9HC56 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDH9Q9HC56 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
PCDH9Q9HC56 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC24.06■■□□□ 1.44
PCDH9Q9HC56 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC24.06■■□□□ 1.44
PCDH9Q9HC56 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC24.06■■□□□ 1.44
PCDH9Q9HC56 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDH9Q9HC56 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDH9Q9HC56 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDH9Q9HC56 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
PCDH9Q9HC56 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDH9Q9HC56 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC24.05■■□□□ 1.44
PCDH9Q9HC56 AC004812.2-201ENST00000611079 2094 ntBASIC24.05■■□□□ 1.44
PCDH9Q9HC56 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDH9Q9HC56 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC24.05■■□□□ 1.44
PCDH9Q9HC56 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDH9Q9HC56 FOXO3B-201ENST00000395675 1928 ntBASIC24.04■■□□□ 1.44
PCDH9Q9HC56 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDH9Q9HC56 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDH9Q9HC56 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDH9Q9HC56 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDH9Q9HC56 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDH9Q9HC56 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC24.03■■□□□ 1.44
PCDH9Q9HC56 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC24.03■■□□□ 1.44
PCDH9Q9HC56 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
PCDH9Q9HC56 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC24.03■■□□□ 1.44
PCDH9Q9HC56 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PCDH9Q9HC56 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PCDH9Q9HC56 HLA-L-211ENST00000482052 1765 ntBASIC24.02■■□□□ 1.44
PCDH9Q9HC56 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PCDH9Q9HC56 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PCDH9Q9HC56 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC24.02■■□□□ 1.44
PCDH9Q9HC56 AL033527.3-201ENST00000566366 1196 ntBASIC24.02■■□□□ 1.44
PCDH9Q9HC56 AC087393.1-201ENST00000582896 145 ntBASIC24.02■■□□□ 1.44
PCDH9Q9HC56 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC24.02■■□□□ 1.44
PCDH9Q9HC56 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PCDH9Q9HC56 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDH9Q9HC56 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
PCDH9Q9HC56 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDH9Q9HC56 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDH9Q9HC56 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDH9Q9HC56 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC24.01■■□□□ 1.43
PCDH9Q9HC56 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
PCDH9Q9HC56 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDH9Q9HC56 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC24.01■■□□□ 1.43
PCDH9Q9HC56 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC24■■□□□ 1.43
PCDH9Q9HC56 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PCDH9Q9HC56 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC24■■□□□ 1.43
PCDH9Q9HC56 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC24■■□□□ 1.43
PCDH9Q9HC56 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC24■■□□□ 1.43
PCDH9Q9HC56 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PCDH9Q9HC56 HYI-210ENST00000486909 905 ntTSL 5 BASIC24■■□□□ 1.43
PCDH9Q9HC56 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC24■■□□□ 1.43
PCDH9Q9HC56 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC24■■□□□ 1.43
PCDH9Q9HC56 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
PCDH9Q9HC56 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDH9Q9HC56 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC23.99■■□□□ 1.43
PCDH9Q9HC56 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC23.99■■□□□ 1.43
PCDH9Q9HC56 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDH9Q9HC56 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDH9Q9HC56 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC23.99■■□□□ 1.43
PCDH9Q9HC56 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
PCDH9Q9HC56 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms