Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 PBX2P1-201ENST00000493219 1291 ntBASIC30.77■■■□□ 2.52
SHANK3Q9BYB0 AC142381.2-201ENST00000566120 298 ntBASIC30.77■■■□□ 2.52
SHANK3Q9BYB0 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC30.77■■■□□ 2.52
SHANK3Q9BYB0 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC30.77■■■□□ 2.52
SHANK3Q9BYB0 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC30.77■■■□□ 2.52
SHANK3Q9BYB0 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC30.77■■■□□ 2.52
SHANK3Q9BYB0 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC30.77■■■□□ 2.52
SHANK3Q9BYB0 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC30.77■■■□□ 2.52
SHANK3Q9BYB0 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC30.77■■■□□ 2.52
SHANK3Q9BYB0 UNC93B3-201ENST00000308076 687 ntBASIC30.76■■■□□ 2.52
SHANK3Q9BYB0 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC30.76■■■□□ 2.52
SHANK3Q9BYB0 LBH-205ENST00000407930 756 ntTSL 2 BASIC30.76■■■□□ 2.52
SHANK3Q9BYB0 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.52
SHANK3Q9BYB0 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC30.76■■■□□ 2.52
SHANK3Q9BYB0 AC024257.2-201ENST00000549699 147 ntBASIC30.76■■■□□ 2.52
SHANK3Q9BYB0 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC30.76■■■□□ 2.51
SHANK3Q9BYB0 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.51
SHANK3Q9BYB0 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
SHANK3Q9BYB0 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC30.76■■■□□ 2.51
SHANK3Q9BYB0 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC30.75■■■□□ 2.51
SHANK3Q9BYB0 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
SHANK3Q9BYB0 AL136162.1-201ENST00000607711 1078 ntBASIC30.75■■■□□ 2.51
SHANK3Q9BYB0 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
SHANK3Q9BYB0 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
SHANK3Q9BYB0 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC30.74■■■□□ 2.51
SHANK3Q9BYB0 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SHANK3Q9BYB0 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC30.74■■■□□ 2.51
SHANK3Q9BYB0 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SHANK3Q9BYB0 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
SHANK3Q9BYB0 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC30.73■■■□□ 2.51
SHANK3Q9BYB0 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
SHANK3Q9BYB0 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHANK3Q9BYB0 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHANK3Q9BYB0 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC30.73■■■□□ 2.51
SHANK3Q9BYB0 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC30.73■■■□□ 2.51
SHANK3Q9BYB0 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC30.73■■■□□ 2.51
SHANK3Q9BYB0 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC30.72■■■□□ 2.51
SHANK3Q9BYB0 ERN1-208ENST00000606895 2068 ntBASIC30.72■■■□□ 2.51
SHANK3Q9BYB0 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
SHANK3Q9BYB0 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC30.72■■■□□ 2.51
SHANK3Q9BYB0 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
SHANK3Q9BYB0 AP001330.3-201ENST00000520123 633 ntBASIC30.72■■■□□ 2.51
SHANK3Q9BYB0 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
SHANK3Q9BYB0 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
SHANK3Q9BYB0 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
SHANK3Q9BYB0 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC30.71■■■□□ 2.51
SHANK3Q9BYB0 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC30.71■■■□□ 2.51
SHANK3Q9BYB0 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC30.71■■■□□ 2.51
SHANK3Q9BYB0 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
SHANK3Q9BYB0 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
SHANK3Q9BYB0 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
SHANK3Q9BYB0 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC30.7■■■□□ 2.51
SHANK3Q9BYB0 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
SHANK3Q9BYB0 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC30.7■■■□□ 2.5
SHANK3Q9BYB0 AC105265.2-201ENST00000467189 838 ntBASIC30.7■■■□□ 2.5
SHANK3Q9BYB0 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC30.69■■■□□ 2.5
SHANK3Q9BYB0 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SHANK3Q9BYB0 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
SHANK3Q9BYB0 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC30.68■■■□□ 2.5
SHANK3Q9BYB0 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SHANK3Q9BYB0 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC30.67■■■□□ 2.5
SHANK3Q9BYB0 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC30.67■■■□□ 2.5
SHANK3Q9BYB0 EDA-201ENST00000338901 1233 ntBASIC30.67■■■□□ 2.5
SHANK3Q9BYB0 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC30.67■■■□□ 2.5
SHANK3Q9BYB0 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SHANK3Q9BYB0 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
SHANK3Q9BYB0 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC30.66■■■□□ 2.5
SHANK3Q9BYB0 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC30.66■■■□□ 2.5
SHANK3Q9BYB0 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SHANK3Q9BYB0 MIR939-201ENST00000401314 82 ntBASIC30.65■■■□□ 2.5
SHANK3Q9BYB0 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC30.65■■■□□ 2.5
SHANK3Q9BYB0 AC097639.1-201ENST00000565519 1891 ntBASIC30.65■■■□□ 2.5
SHANK3Q9BYB0 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC30.65■■■□□ 2.5
SHANK3Q9BYB0 GATM-206ENST00000558336 1522 ntTSL 2 BASIC30.64■■■□□ 2.5
SHANK3Q9BYB0 AF213884.3-201ENST00000563833 479 ntBASIC30.64■■■□□ 2.5
SHANK3Q9BYB0 SF1-220ENST00000626028 704 ntTSL 2 BASIC30.64■■■□□ 2.5
SHANK3Q9BYB0 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SHANK3Q9BYB0 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
SHANK3Q9BYB0 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
SHANK3Q9BYB0 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC30.64■■■□□ 2.49
SHANK3Q9BYB0 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
SHANK3Q9BYB0 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
SHANK3Q9BYB0 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC30.63■■■□□ 2.49
SHANK3Q9BYB0 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
SHANK3Q9BYB0 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC30.63■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms