Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
SPENQ96T58 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SPENQ96T58 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SPENQ96T58 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SPENQ96T58 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
SPENQ96T58 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SPENQ96T58 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
SPENQ96T58 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.35■■□□□ 1.01
SPENQ96T58 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SPENQ96T58 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.34■■□□□ 1.01
SPENQ96T58 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.34■■□□□ 1.01
SPENQ96T58 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
SPENQ96T58 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SPENQ96T58 ERN1-208ENST00000606895 2068 ntBASIC21.34■■□□□ 1.01
SPENQ96T58 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.34■■□□□ 1.01
SPENQ96T58 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.34■■□□□ 1.01
SPENQ96T58 AL136967.2-201ENST00000623968 743 ntBASIC21.34■■□□□ 1.01
SPENQ96T58 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
SPENQ96T58 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SPENQ96T58 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
SPENQ96T58 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.33■■□□□ 1.01
SPENQ96T58 AL356740.2-201ENST00000601559 647 ntBASIC21.33■■□□□ 1.01
SPENQ96T58 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SPENQ96T58 AC105265.2-201ENST00000467189 838 ntBASIC21.33■■□□□ 1.01
SPENQ96T58 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.33■■□□□ 1.01
SPENQ96T58 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.33■■□□□ 1
SPENQ96T58 AP001330.3-201ENST00000520123 633 ntBASIC21.33■■□□□ 1
SPENQ96T58 AC087623.3-201ENST00000607047 1098 ntBASIC21.33■■□□□ 1
SPENQ96T58 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
SPENQ96T58 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SPENQ96T58 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
SPENQ96T58 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.32■■□□□ 1
SPENQ96T58 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.32■■□□□ 1
SPENQ96T58 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
SPENQ96T58 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SPENQ96T58 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.31■■□□□ 1
SPENQ96T58 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.31■■□□□ 1
SPENQ96T58 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SPENQ96T58 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SPENQ96T58 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.31■■□□□ 1
SPENQ96T58 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SPENQ96T58 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
SPENQ96T58 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.31■■□□□ 1
SPENQ96T58 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.3■■□□□ 1
SPENQ96T58 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SPENQ96T58 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
SPENQ96T58 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.3■■□□□ 1
SPENQ96T58 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SPENQ96T58 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.3■■□□□ 1
SPENQ96T58 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.29■■□□□ 1
SPENQ96T58 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
SPENQ96T58 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SPENQ96T58 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.29■■□□□ 1
SPENQ96T58 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SPENQ96T58 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SPENQ96T58 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SPENQ96T58 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SPENQ96T58 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
SPENQ96T58 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
SPENQ96T58 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.27■■□□□ 1
SPENQ96T58 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.27■■□□□ 1
SPENQ96T58 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.27■■□□□ 1
SPENQ96T58 KRT18P10-201ENST00000388836 1287 ntBASIC21.27■■□□□ 1
SPENQ96T58 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SPENQ96T58 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.26■□□□□ 0.99
SPENQ96T58 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SPENQ96T58 AC142472.1-201ENST00000612013 1741 ntBASIC21.26■□□□□ 0.99
SPENQ96T58 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SPENQ96T58 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.26■□□□□ 0.99
SPENQ96T58 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.26■□□□□ 0.99
SPENQ96T58 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SPENQ96T58 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.25■□□□□ 0.99
SPENQ96T58 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.25■□□□□ 0.99
SPENQ96T58 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SPENQ96T58 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
SPENQ96T58 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SPENQ96T58 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
SPENQ96T58 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.25■□□□□ 0.99
SPENQ96T58 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.25■□□□□ 0.99
SPENQ96T58 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.25■□□□□ 0.99
SPENQ96T58 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.24■□□□□ 0.99
SPENQ96T58 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.24■□□□□ 0.99
SPENQ96T58 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.24■□□□□ 0.99
SPENQ96T58 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SPENQ96T58 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SPENQ96T58 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SPENQ96T58 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SPENQ96T58 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SPENQ96T58 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SPENQ96T58 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
SPENQ96T58 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.23■□□□□ 0.99
SPENQ96T58 EDA-201ENST00000338901 1233 ntBASIC21.23■□□□□ 0.99
SPENQ96T58 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.23■□□□□ 0.99
SPENQ96T58 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SPENQ96T58 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SPENQ96T58 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SPENQ96T58 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
SPENQ96T58 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
SPENQ96T58 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.22■□□□□ 0.99
SPENQ96T58 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms