Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CPNE4Q96A23 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
CPNE4Q96A23 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPNE4Q96A23 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CPNE4Q96A23 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.91■□□□□ 0.94
CPNE4Q96A23 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CPNE4Q96A23 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CPNE4Q96A23 BX664725.1-201ENST00000438252 379 ntBASIC20.91■□□□□ 0.94
CPNE4Q96A23 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CPNE4Q96A23 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
CPNE4Q96A23 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CPNE4Q96A23 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CPNE4Q96A23 Z92544.1-202ENST00000571933 1220 ntBASIC20.91■□□□□ 0.94
CPNE4Q96A23 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.91■□□□□ 0.94
CPNE4Q96A23 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CPNE4Q96A23 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CPNE4Q96A23 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CPNE4Q96A23 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.9■□□□□ 0.94
CPNE4Q96A23 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CPNE4Q96A23 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CPNE4Q96A23 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPNE4Q96A23 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CPNE4Q96A23 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.9■□□□□ 0.94
CPNE4Q96A23 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.9■□□□□ 0.94
CPNE4Q96A23 AC137630.3-201ENST00000607245 391 ntBASIC20.9■□□□□ 0.94
CPNE4Q96A23 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPNE4Q96A23 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPNE4Q96A23 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.9■□□□□ 0.94
CPNE4Q96A23 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CPNE4Q96A23 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CPNE4Q96A23 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CPNE4Q96A23 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CPNE4Q96A23 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.89■□□□□ 0.93
CPNE4Q96A23 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CPNE4Q96A23 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CPNE4Q96A23 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CPNE4Q96A23 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CPNE4Q96A23 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CPNE4Q96A23 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CPNE4Q96A23 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CPNE4Q96A23 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CPNE4Q96A23 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CPNE4Q96A23 AC022211.4-201ENST00000625094 2161 ntBASIC20.88■□□□□ 0.93
CPNE4Q96A23 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.88■□□□□ 0.93
CPNE4Q96A23 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CPNE4Q96A23 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
CPNE4Q96A23 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CPNE4Q96A23 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CPNE4Q96A23 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CPNE4Q96A23 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CPNE4Q96A23 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CPNE4Q96A23 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CPNE4Q96A23 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.87■□□□□ 0.93
CPNE4Q96A23 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CPNE4Q96A23 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CPNE4Q96A23 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CPNE4Q96A23 KRT125P-201ENST00000546827 989 ntBASIC20.87■□□□□ 0.93
CPNE4Q96A23 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CPNE4Q96A23 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.87■□□□□ 0.93
CPNE4Q96A23 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.87■□□□□ 0.93
CPNE4Q96A23 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CPNE4Q96A23 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CPNE4Q96A23 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CPNE4Q96A23 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CPNE4Q96A23 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CPNE4Q96A23 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.86■□□□□ 0.93
CPNE4Q96A23 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CPNE4Q96A23 AC020928.2-201ENST00000588717 2197 ntBASIC20.86■□□□□ 0.93
CPNE4Q96A23 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.86■□□□□ 0.93
CPNE4Q96A23 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CPNE4Q96A23 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CPNE4Q96A23 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CPNE4Q96A23 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CPNE4Q96A23 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CPNE4Q96A23 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CPNE4Q96A23 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.85■□□□□ 0.93
CPNE4Q96A23 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.85■□□□□ 0.93
CPNE4Q96A23 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CPNE4Q96A23 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CPNE4Q96A23 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.85■□□□□ 0.93
CPNE4Q96A23 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CPNE4Q96A23 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CPNE4Q96A23 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CPNE4Q96A23 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CPNE4Q96A23 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.84■□□□□ 0.93
CPNE4Q96A23 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CPNE4Q96A23 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.84■□□□□ 0.93
CPNE4Q96A23 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CPNE4Q96A23 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.84■□□□□ 0.93
CPNE4Q96A23 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CPNE4Q96A23 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CPNE4Q96A23 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CPNE4Q96A23 AC142381.3-201ENST00000568208 1670 ntBASIC20.83■□□□□ 0.93
CPNE4Q96A23 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.83■□□□□ 0.93
CPNE4Q96A23 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CPNE4Q96A23 AC239859.2-201ENST00000444165 318 ntBASIC20.83■□□□□ 0.93
CPNE4Q96A23 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.83■□□□□ 0.93
CPNE4Q96A23 AP003733.4-201ENST00000623785 1697 ntBASIC20.83■□□□□ 0.92
CPNE4Q96A23 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CPNE4Q96A23 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms