Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HMGB4Q8WW32 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC23.55■■□□□ 1.36
HMGB4Q8WW32 AC097639.1-201ENST00000565519 1891 ntBASIC23.55■■□□□ 1.36
HMGB4Q8WW32 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC23.55■■□□□ 1.36
HMGB4Q8WW32 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
HMGB4Q8WW32 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.54■■□□□ 1.36
HMGB4Q8WW32 MIR6722-201ENST00000617286 78 ntBASIC23.54■■□□□ 1.36
HMGB4Q8WW32 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
HMGB4Q8WW32 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
HMGB4Q8WW32 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
HMGB4Q8WW32 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC23.53■■□□□ 1.36
HMGB4Q8WW32 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
HMGB4Q8WW32 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
HMGB4Q8WW32 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC23.53■■□□□ 1.36
HMGB4Q8WW32 AC133561.4-201ENST00000566112 224 ntBASIC23.53■■□□□ 1.36
HMGB4Q8WW32 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
HMGB4Q8WW32 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC23.53■■□□□ 1.36
HMGB4Q8WW32 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.53■■□□□ 1.36
HMGB4Q8WW32 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
HMGB4Q8WW32 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HMGB4Q8WW32 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HMGB4Q8WW32 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC23.52■■□□□ 1.36
HMGB4Q8WW32 PBX2P1-201ENST00000493219 1291 ntBASIC23.52■■□□□ 1.36
HMGB4Q8WW32 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HMGB4Q8WW32 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC23.52■■□□□ 1.36
HMGB4Q8WW32 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HMGB4Q8WW32 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HMGB4Q8WW32 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HMGB4Q8WW32 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HMGB4Q8WW32 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.51■■□□□ 1.35
HMGB4Q8WW32 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HMGB4Q8WW32 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
HMGB4Q8WW32 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23.51■■□□□ 1.35
HMGB4Q8WW32 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
HMGB4Q8WW32 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGB4Q8WW32 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC23.5■■□□□ 1.35
HMGB4Q8WW32 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC23.5■■□□□ 1.35
HMGB4Q8WW32 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.5■■□□□ 1.35
HMGB4Q8WW32 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.5■■□□□ 1.35
HMGB4Q8WW32 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGB4Q8WW32 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.49■■□□□ 1.35
HMGB4Q8WW32 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
HMGB4Q8WW32 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
HMGB4Q8WW32 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
HMGB4Q8WW32 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC23.49■■□□□ 1.35
HMGB4Q8WW32 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
HMGB4Q8WW32 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.49■■□□□ 1.35
HMGB4Q8WW32 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
HMGB4Q8WW32 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
HMGB4Q8WW32 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
HMGB4Q8WW32 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.49■■□□□ 1.35
HMGB4Q8WW32 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
HMGB4Q8WW32 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.48■■□□□ 1.35
HMGB4Q8WW32 LBH-205ENST00000407930 756 ntTSL 2 BASIC23.48■■□□□ 1.35
HMGB4Q8WW32 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC23.48■■□□□ 1.35
HMGB4Q8WW32 AC106739.1-201ENST00000617035 715 ntBASIC23.48■■□□□ 1.35
HMGB4Q8WW32 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.48■■□□□ 1.35
HMGB4Q8WW32 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.48■■□□□ 1.35
HMGB4Q8WW32 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
HMGB4Q8WW32 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
HMGB4Q8WW32 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
HMGB4Q8WW32 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
HMGB4Q8WW32 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
HMGB4Q8WW32 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.47■■□□□ 1.35
HMGB4Q8WW32 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC23.47■■□□□ 1.35
HMGB4Q8WW32 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.47■■□□□ 1.35
HMGB4Q8WW32 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
HMGB4Q8WW32 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.47■■□□□ 1.35
HMGB4Q8WW32 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
HMGB4Q8WW32 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
HMGB4Q8WW32 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
HMGB4Q8WW32 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
HMGB4Q8WW32 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.35
HMGB4Q8WW32 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
HMGB4Q8WW32 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.34
HMGB4Q8WW32 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
HMGB4Q8WW32 UNC93B3-201ENST00000308076 687 ntBASIC23.45■■□□□ 1.34
HMGB4Q8WW32 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC23.45■■□□□ 1.34
HMGB4Q8WW32 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
HMGB4Q8WW32 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.45■■□□□ 1.34
HMGB4Q8WW32 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
HMGB4Q8WW32 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
HMGB4Q8WW32 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.44■■□□□ 1.34
HMGB4Q8WW32 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
HMGB4Q8WW32 GUK1-205ENST00000366722 850 ntTSL 3 BASIC23.44■■□□□ 1.34
HMGB4Q8WW32 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
HMGB4Q8WW32 EBPL-204ENST00000378272 766 ntTSL 3 BASIC23.44■■□□□ 1.34
HMGB4Q8WW32 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.44■■□□□ 1.34
HMGB4Q8WW32 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
HMGB4Q8WW32 AC142381.2-201ENST00000566120 298 ntBASIC23.44■■□□□ 1.34
HMGB4Q8WW32 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
HMGB4Q8WW32 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
HMGB4Q8WW32 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.44■■□□□ 1.34
HMGB4Q8WW32 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.44■■□□□ 1.34
HMGB4Q8WW32 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
HMGB4Q8WW32 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC23.43■■□□□ 1.34
HMGB4Q8WW32 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC23.43■■□□□ 1.34
HMGB4Q8WW32 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
HMGB4Q8WW32 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
HMGB4Q8WW32 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC23.43■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms