Protein–RNA interactions for Protein: Q8TB33

LINC01560, Putative uncharacterized protein encoded by LINC01560, humanhuman

Predictions only

Length 94 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01560Q8TB33 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.36■□□□□ 0.85
LINC01560Q8TB33 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LINC01560Q8TB33 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LINC01560Q8TB33 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LINC01560Q8TB33 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.36■□□□□ 0.85
LINC01560Q8TB33 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.35■□□□□ 0.85
LINC01560Q8TB33 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
LINC01560Q8TB33 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LINC01560Q8TB33 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LINC01560Q8TB33 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
LINC01560Q8TB33 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LINC01560Q8TB33 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.35■□□□□ 0.85
LINC01560Q8TB33 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.35■□□□□ 0.85
LINC01560Q8TB33 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
LINC01560Q8TB33 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
LINC01560Q8TB33 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LINC01560Q8TB33 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LINC01560Q8TB33 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
LINC01560Q8TB33 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LINC01560Q8TB33 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.34■□□□□ 0.85
LINC01560Q8TB33 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.34■□□□□ 0.85
LINC01560Q8TB33 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.33■□□□□ 0.85
LINC01560Q8TB33 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LINC01560Q8TB33 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LINC01560Q8TB33 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LINC01560Q8TB33 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LINC01560Q8TB33 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.33■□□□□ 0.85
LINC01560Q8TB33 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.33■□□□□ 0.84
LINC01560Q8TB33 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
LINC01560Q8TB33 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LINC01560Q8TB33 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LINC01560Q8TB33 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LINC01560Q8TB33 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
LINC01560Q8TB33 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LINC01560Q8TB33 MIR6722-201ENST00000617286 78 ntBASIC20.32■□□□□ 0.84
LINC01560Q8TB33 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LINC01560Q8TB33 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LINC01560Q8TB33 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LINC01560Q8TB33 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LINC01560Q8TB33 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LINC01560Q8TB33 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.31■□□□□ 0.84
LINC01560Q8TB33 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LINC01560Q8TB33 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.31■□□□□ 0.84
LINC01560Q8TB33 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.31■□□□□ 0.84
LINC01560Q8TB33 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LINC01560Q8TB33 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC20.31■□□□□ 0.84
LINC01560Q8TB33 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.31■□□□□ 0.84
LINC01560Q8TB33 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LINC01560Q8TB33 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LINC01560Q8TB33 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
LINC01560Q8TB33 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.31■□□□□ 0.84
LINC01560Q8TB33 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LINC01560Q8TB33 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LINC01560Q8TB33 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LINC01560Q8TB33 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LINC01560Q8TB33 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.3■□□□□ 0.84
LINC01560Q8TB33 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.3■□□□□ 0.84
LINC01560Q8TB33 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LINC01560Q8TB33 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LINC01560Q8TB33 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LINC01560Q8TB33 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
LINC01560Q8TB33 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20.29■□□□□ 0.84
LINC01560Q8TB33 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.29■□□□□ 0.84
LINC01560Q8TB33 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.29■□□□□ 0.84
LINC01560Q8TB33 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LINC01560Q8TB33 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LINC01560Q8TB33 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LINC01560Q8TB33 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LINC01560Q8TB33 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LINC01560Q8TB33 PBX2P1-201ENST00000493219 1291 ntBASIC20.28■□□□□ 0.84
LINC01560Q8TB33 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.28■□□□□ 0.84
LINC01560Q8TB33 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.28■□□□□ 0.84
LINC01560Q8TB33 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LINC01560Q8TB33 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LINC01560Q8TB33 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LINC01560Q8TB33 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LINC01560Q8TB33 AC010501.1-201ENST00000606270 1962 ntBASIC20.27■□□□□ 0.84
LINC01560Q8TB33 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC20.27■□□□□ 0.84
LINC01560Q8TB33 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.27■□□□□ 0.84
LINC01560Q8TB33 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LINC01560Q8TB33 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
LINC01560Q8TB33 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
LINC01560Q8TB33 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LINC01560Q8TB33 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
LINC01560Q8TB33 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LINC01560Q8TB33 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LINC01560Q8TB33 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LINC01560Q8TB33 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.26■□□□□ 0.83
LINC01560Q8TB33 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.26■□□□□ 0.83
LINC01560Q8TB33 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LINC01560Q8TB33 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LINC01560Q8TB33 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LINC01560Q8TB33 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
LINC01560Q8TB33 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LINC01560Q8TB33 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.25■□□□□ 0.83
LINC01560Q8TB33 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.25■□□□□ 0.83
LINC01560Q8TB33 AC133561.4-201ENST00000566112 224 ntBASIC20.25■□□□□ 0.83
LINC01560Q8TB33 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LINC01560Q8TB33 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
LINC01560Q8TB33 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms