Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CCDC60Q8IWA6 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
CCDC60Q8IWA6 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC26.14■■□□□ 1.78
CCDC60Q8IWA6 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
CCDC60Q8IWA6 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC26.13■■□□□ 1.77
CCDC60Q8IWA6 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CCDC60Q8IWA6 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.13■■□□□ 1.77
CCDC60Q8IWA6 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
CCDC60Q8IWA6 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC26.13■■□□□ 1.77
CCDC60Q8IWA6 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC26.13■■□□□ 1.77
CCDC60Q8IWA6 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CCDC60Q8IWA6 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CCDC60Q8IWA6 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
CCDC60Q8IWA6 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CCDC60Q8IWA6 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC26.12■■□□□ 1.77
CCDC60Q8IWA6 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CCDC60Q8IWA6 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC26.12■■□□□ 1.77
CCDC60Q8IWA6 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC26.12■■□□□ 1.77
CCDC60Q8IWA6 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
CCDC60Q8IWA6 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CCDC60Q8IWA6 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC26.11■■□□□ 1.77
CCDC60Q8IWA6 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CCDC60Q8IWA6 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CCDC60Q8IWA6 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC26.11■■□□□ 1.77
CCDC60Q8IWA6 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC26.11■■□□□ 1.77
CCDC60Q8IWA6 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC26.11■■□□□ 1.77
CCDC60Q8IWA6 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
CCDC60Q8IWA6 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
CCDC60Q8IWA6 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC26.09■■□□□ 1.77
CCDC60Q8IWA6 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
CCDC60Q8IWA6 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CCDC60Q8IWA6 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC26.09■■□□□ 1.77
CCDC60Q8IWA6 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC26.09■■□□□ 1.77
CCDC60Q8IWA6 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC60Q8IWA6 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC26.08■■□□□ 1.77
CCDC60Q8IWA6 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC26.08■■□□□ 1.77
CCDC60Q8IWA6 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC60Q8IWA6 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC60Q8IWA6 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC60Q8IWA6 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC26.08■■□□□ 1.76
CCDC60Q8IWA6 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC60Q8IWA6 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC26.07■■□□□ 1.76
CCDC60Q8IWA6 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC26.07■■□□□ 1.76
CCDC60Q8IWA6 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC60Q8IWA6 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC60Q8IWA6 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC60Q8IWA6 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
CCDC60Q8IWA6 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC60Q8IWA6 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC60Q8IWA6 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC26.06■■□□□ 1.76
CCDC60Q8IWA6 CLTA-210ENST00000540080 989 ntTSL 2 BASIC26.06■■□□□ 1.76
CCDC60Q8IWA6 MIR6089-201ENST00000616698 64 ntBASIC26.06■■□□□ 1.76
CCDC60Q8IWA6 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC60Q8IWA6 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC26.06■■□□□ 1.76
CCDC60Q8IWA6 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
CCDC60Q8IWA6 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC60Q8IWA6 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC60Q8IWA6 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC26.05■■□□□ 1.76
CCDC60Q8IWA6 AC010997.5-201ENST00000609182 354 ntBASIC26.05■■□□□ 1.76
CCDC60Q8IWA6 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC26.05■■□□□ 1.76
CCDC60Q8IWA6 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC60Q8IWA6 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC60Q8IWA6 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC26.04■■□□□ 1.76
CCDC60Q8IWA6 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.04■■□□□ 1.76
CCDC60Q8IWA6 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC60Q8IWA6 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC60Q8IWA6 MTDHP2-201ENST00000601468 714 ntBASIC26.04■■□□□ 1.76
CCDC60Q8IWA6 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
CCDC60Q8IWA6 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC60Q8IWA6 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC60Q8IWA6 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC60Q8IWA6 LSM4-201ENST00000252816 986 ntTSL 2 BASIC26.03■■□□□ 1.76
CCDC60Q8IWA6 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC60Q8IWA6 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC60Q8IWA6 SNX5-217ENST00000606557 1087 ntBASIC26.03■■□□□ 1.76
CCDC60Q8IWA6 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC26.03■■□□□ 1.76
CCDC60Q8IWA6 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC60Q8IWA6 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC60Q8IWA6 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC60Q8IWA6 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC60Q8IWA6 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC26.02■■□□□ 1.76
CCDC60Q8IWA6 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC60Q8IWA6 LBH-205ENST00000407930 756 ntTSL 2 BASIC26.02■■□□□ 1.76
CCDC60Q8IWA6 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC26.02■■□□□ 1.76
CCDC60Q8IWA6 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.02■■□□□ 1.76
CCDC60Q8IWA6 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC60Q8IWA6 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC60Q8IWA6 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC60Q8IWA6 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC26.02■■□□□ 1.76
CCDC60Q8IWA6 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC60Q8IWA6 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC26.01■■□□□ 1.75
CCDC60Q8IWA6 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.01■■□□□ 1.75
CCDC60Q8IWA6 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC60Q8IWA6 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
CCDC60Q8IWA6 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC60Q8IWA6 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC60Q8IWA6 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC60Q8IWA6 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC26■■□□□ 1.75
CCDC60Q8IWA6 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC60Q8IWA6 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC26■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms