Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 TRIR-202ENST00000588213 841 ntTSL 3 BASIC26.88■■□□□ 1.89
SH3RF1Q7Z6J0 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
SH3RF1Q7Z6J0 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
SH3RF1Q7Z6J0 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.88■■□□□ 1.89
SH3RF1Q7Z6J0 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC26.87■■□□□ 1.89
SH3RF1Q7Z6J0 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
SH3RF1Q7Z6J0 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SH3RF1Q7Z6J0 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC26.87■■□□□ 1.89
SH3RF1Q7Z6J0 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC26.87■■□□□ 1.89
SH3RF1Q7Z6J0 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC26.86■■□□□ 1.89
SH3RF1Q7Z6J0 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SH3RF1Q7Z6J0 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
SH3RF1Q7Z6J0 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.86■■□□□ 1.89
SH3RF1Q7Z6J0 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
SH3RF1Q7Z6J0 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SH3RF1Q7Z6J0 AC138932.3-201ENST00000567634 1902 ntBASIC26.85■■□□□ 1.89
SH3RF1Q7Z6J0 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SH3RF1Q7Z6J0 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC26.85■■□□□ 1.89
SH3RF1Q7Z6J0 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC26.85■■□□□ 1.89
SH3RF1Q7Z6J0 AC131281.2-201ENST00000520478 145 ntBASIC26.85■■□□□ 1.89
SH3RF1Q7Z6J0 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SH3RF1Q7Z6J0 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SH3RF1Q7Z6J0 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SH3RF1Q7Z6J0 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
SH3RF1Q7Z6J0 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SH3RF1Q7Z6J0 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SH3RF1Q7Z6J0 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC26.84■■□□□ 1.89
SH3RF1Q7Z6J0 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC26.84■■□□□ 1.89
SH3RF1Q7Z6J0 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SH3RF1Q7Z6J0 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC26.84■■□□□ 1.89
SH3RF1Q7Z6J0 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.84■■□□□ 1.89
SH3RF1Q7Z6J0 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
SH3RF1Q7Z6J0 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC26.83■■□□□ 1.89
SH3RF1Q7Z6J0 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
SH3RF1Q7Z6J0 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC26.83■■□□□ 1.89
SH3RF1Q7Z6J0 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC26.83■■□□□ 1.89
SH3RF1Q7Z6J0 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
SH3RF1Q7Z6J0 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
SH3RF1Q7Z6J0 AC097639.1-201ENST00000565519 1891 ntBASIC26.83■■□□□ 1.88
SH3RF1Q7Z6J0 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
SH3RF1Q7Z6J0 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC26.82■■□□□ 1.88
SH3RF1Q7Z6J0 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
SH3RF1Q7Z6J0 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
SH3RF1Q7Z6J0 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
SH3RF1Q7Z6J0 KRT18P24-201ENST00000344739 1156 ntBASIC26.82■■□□□ 1.88
SH3RF1Q7Z6J0 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
SH3RF1Q7Z6J0 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
SH3RF1Q7Z6J0 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC26.81■■□□□ 1.88
SH3RF1Q7Z6J0 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SH3RF1Q7Z6J0 AC022616.5-201ENST00000518796 181 ntBASIC26.81■■□□□ 1.88
SH3RF1Q7Z6J0 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC26.81■■□□□ 1.88
SH3RF1Q7Z6J0 AC137630.3-201ENST00000607245 391 ntBASIC26.81■■□□□ 1.88
SH3RF1Q7Z6J0 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC26.81■■□□□ 1.88
SH3RF1Q7Z6J0 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SH3RF1Q7Z6J0 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
SH3RF1Q7Z6J0 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
SH3RF1Q7Z6J0 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
SH3RF1Q7Z6J0 AC093323.1-202ENST00000635031 2045 ntBASIC26.79■■□□□ 1.88
SH3RF1Q7Z6J0 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC26.79■■□□□ 1.88
SH3RF1Q7Z6J0 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC26.79■■□□□ 1.88
SH3RF1Q7Z6J0 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC26.79■■□□□ 1.88
SH3RF1Q7Z6J0 AC021242.3-201ENST00000607598 1377 ntBASIC26.79■■□□□ 1.88
SH3RF1Q7Z6J0 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC26.78■■□□□ 1.88
SH3RF1Q7Z6J0 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
SH3RF1Q7Z6J0 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
SH3RF1Q7Z6J0 RPP21-222ENST00000433076 577 ntTSL 2 BASIC26.78■■□□□ 1.88
SH3RF1Q7Z6J0 SRR-208ENST00000576848 588 ntTSL 4 BASIC26.78■■□□□ 1.88
SH3RF1Q7Z6J0 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
SH3RF1Q7Z6J0 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
SH3RF1Q7Z6J0 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
SH3RF1Q7Z6J0 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
SH3RF1Q7Z6J0 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
SH3RF1Q7Z6J0 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
SH3RF1Q7Z6J0 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.77■■□□□ 1.88
SH3RF1Q7Z6J0 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
SH3RF1Q7Z6J0 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC26.77■■□□□ 1.88
SH3RF1Q7Z6J0 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC26.77■■□□□ 1.88
SH3RF1Q7Z6J0 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC26.77■■□□□ 1.88
SH3RF1Q7Z6J0 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC26.77■■□□□ 1.88
SH3RF1Q7Z6J0 SLC6A10P-202ENST00000431994 2058 ntBASIC26.77■■□□□ 1.88
SH3RF1Q7Z6J0 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
SH3RF1Q7Z6J0 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC26.76■■□□□ 1.87
SH3RF1Q7Z6J0 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
SH3RF1Q7Z6J0 AL136116.3-201ENST00000402907 1138 ntBASIC26.76■■□□□ 1.87
SH3RF1Q7Z6J0 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.76■■□□□ 1.87
SH3RF1Q7Z6J0 AC110285.6-201ENST00000617652 491 ntBASIC26.76■■□□□ 1.87
SH3RF1Q7Z6J0 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC26.76■■□□□ 1.87
SH3RF1Q7Z6J0 PKM-204ENST00000449901 2526 ntTSL 2 BASIC26.76■■□□□ 1.87
SH3RF1Q7Z6J0 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.75■■□□□ 1.87
SH3RF1Q7Z6J0 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC26.75■■□□□ 1.87
SH3RF1Q7Z6J0 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SH3RF1Q7Z6J0 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
SH3RF1Q7Z6J0 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
SH3RF1Q7Z6J0 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
SH3RF1Q7Z6J0 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
SH3RF1Q7Z6J0 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC26.74■■□□□ 1.87
SH3RF1Q7Z6J0 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC26.74■■□□□ 1.87
SH3RF1Q7Z6J0 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC26.74■■□□□ 1.87
SH3RF1Q7Z6J0 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC26.74■■□□□ 1.87
SH3RF1Q7Z6J0 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms