Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NIPAL3Q6P499 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NIPAL3Q6P499 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
NIPAL3Q6P499 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.18■□□□□ 0.98
NIPAL3Q6P499 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NIPAL3Q6P499 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
NIPAL3Q6P499 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NIPAL3Q6P499 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NIPAL3Q6P499 DUX4L18-201ENST00000553347 1267 ntBASIC21.18■□□□□ 0.98
NIPAL3Q6P499 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.18■□□□□ 0.98
NIPAL3Q6P499 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NIPAL3Q6P499 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NIPAL3Q6P499 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
NIPAL3Q6P499 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NIPAL3Q6P499 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.18■□□□□ 0.98
NIPAL3Q6P499 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
NIPAL3Q6P499 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NIPAL3Q6P499 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.18■□□□□ 0.98
NIPAL3Q6P499 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NIPAL3Q6P499 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NIPAL3Q6P499 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.17■□□□□ 0.98
NIPAL3Q6P499 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
NIPAL3Q6P499 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.17■□□□□ 0.98
NIPAL3Q6P499 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.17■□□□□ 0.98
NIPAL3Q6P499 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.17■□□□□ 0.98
NIPAL3Q6P499 AC012354.3-201ENST00000623734 483 ntBASIC21.17■□□□□ 0.98
NIPAL3Q6P499 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NIPAL3Q6P499 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NIPAL3Q6P499 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NIPAL3Q6P499 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NIPAL3Q6P499 AC004987.1-201ENST00000428627 508 ntBASIC21.16■□□□□ 0.98
NIPAL3Q6P499 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
NIPAL3Q6P499 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NIPAL3Q6P499 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.16■□□□□ 0.98
NIPAL3Q6P499 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NIPAL3Q6P499 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NIPAL3Q6P499 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.15■□□□□ 0.98
NIPAL3Q6P499 ATP5G2P3-201ENST00000429083 425 ntBASIC21.15■□□□□ 0.98
NIPAL3Q6P499 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.15■□□□□ 0.98
NIPAL3Q6P499 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NIPAL3Q6P499 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NIPAL3Q6P499 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NIPAL3Q6P499 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
NIPAL3Q6P499 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
NIPAL3Q6P499 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NIPAL3Q6P499 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.14■□□□□ 0.98
NIPAL3Q6P499 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NIPAL3Q6P499 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
NIPAL3Q6P499 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.14■□□□□ 0.97
NIPAL3Q6P499 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
NIPAL3Q6P499 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC21.14■□□□□ 0.97
NIPAL3Q6P499 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
NIPAL3Q6P499 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.14■□□□□ 0.97
NIPAL3Q6P499 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.13■□□□□ 0.97
NIPAL3Q6P499 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NIPAL3Q6P499 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
NIPAL3Q6P499 RPS2P7-201ENST00000447334 885 ntBASIC21.13■□□□□ 0.97
NIPAL3Q6P499 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
NIPAL3Q6P499 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NIPAL3Q6P499 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NIPAL3Q6P499 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.13■□□□□ 0.97
NIPAL3Q6P499 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NIPAL3Q6P499 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NIPAL3Q6P499 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NIPAL3Q6P499 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
NIPAL3Q6P499 TSPY13P-201ENST00000338964 914 ntBASIC21.12■□□□□ 0.97
NIPAL3Q6P499 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NIPAL3Q6P499 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NIPAL3Q6P499 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NIPAL3Q6P499 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC21.12■□□□□ 0.97
NIPAL3Q6P499 MIR6089-201ENST00000616698 64 ntBASIC21.12■□□□□ 0.97
NIPAL3Q6P499 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.12■□□□□ 0.97
NIPAL3Q6P499 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
NIPAL3Q6P499 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NIPAL3Q6P499 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NIPAL3Q6P499 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.12■□□□□ 0.97
NIPAL3Q6P499 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
NIPAL3Q6P499 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NIPAL3Q6P499 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NIPAL3Q6P499 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NIPAL3Q6P499 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NIPAL3Q6P499 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.11■□□□□ 0.97
NIPAL3Q6P499 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.11■□□□□ 0.97
NIPAL3Q6P499 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NIPAL3Q6P499 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.11■□□□□ 0.97
NIPAL3Q6P499 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
NIPAL3Q6P499 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.11■□□□□ 0.97
NIPAL3Q6P499 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.11■□□□□ 0.97
NIPAL3Q6P499 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.1■□□□□ 0.97
NIPAL3Q6P499 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NIPAL3Q6P499 AC139795.1-202ENST00000500444 432 ntBASIC21.1■□□□□ 0.97
NIPAL3Q6P499 AL033527.3-201ENST00000566366 1196 ntBASIC21.1■□□□□ 0.97
NIPAL3Q6P499 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NIPAL3Q6P499 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NIPAL3Q6P499 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NIPAL3Q6P499 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NIPAL3Q6P499 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NIPAL3Q6P499 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NIPAL3Q6P499 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NIPAL3Q6P499 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms