Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 AC142381.2-201ENST00000566120 298 ntBASIC26.13■■□□□ 1.77
NKX3-2P78367 AC096887.2-201ENST00000623443 1957 ntBASIC26.13■■□□□ 1.77
NKX3-2P78367 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
NKX3-2P78367 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
NKX3-2P78367 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
NKX3-2P78367 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
NKX3-2P78367 AC004448.1-201ENST00000458332 883 ntBASIC26.12■■□□□ 1.77
NKX3-2P78367 AL136162.1-201ENST00000607711 1078 ntBASIC26.12■■□□□ 1.77
NKX3-2P78367 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC26.12■■□□□ 1.77
NKX3-2P78367 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.12■■□□□ 1.77
NKX3-2P78367 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
NKX3-2P78367 EDA-201ENST00000338901 1233 ntBASIC26.11■■□□□ 1.77
NKX3-2P78367 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
NKX3-2P78367 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC26.11■■□□□ 1.77
NKX3-2P78367 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
NKX3-2P78367 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
NKX3-2P78367 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
NKX3-2P78367 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC26.11■■□□□ 1.77
NKX3-2P78367 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
NKX3-2P78367 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC26.1■■□□□ 1.77
NKX3-2P78367 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
NKX3-2P78367 AC135279.3-201ENST00000610945 1311 ntBASIC26.1■■□□□ 1.77
NKX3-2P78367 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC26.1■■□□□ 1.77
NKX3-2P78367 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC26.1■■□□□ 1.77
NKX3-2P78367 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
NKX3-2P78367 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
NKX3-2P78367 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
NKX3-2P78367 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC26.09■■□□□ 1.77
NKX3-2P78367 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
NKX3-2P78367 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
NKX3-2P78367 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
NKX3-2P78367 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
NKX3-2P78367 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC26.09■■□□□ 1.77
NKX3-2P78367 AC026271.2-201ENST00000428091 497 ntBASIC26.09■■□□□ 1.77
NKX3-2P78367 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
NKX3-2P78367 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC26.09■■□□□ 1.77
NKX3-2P78367 RARRES2P6-201ENST00000567333 442 ntBASIC26.09■■□□□ 1.77
NKX3-2P78367 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
NKX3-2P78367 GATM-206ENST00000558336 1522 ntTSL 2 BASIC26.09■■□□□ 1.77
NKX3-2P78367 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
NKX3-2P78367 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
NKX3-2P78367 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26.08■■□□□ 1.77
NKX3-2P78367 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC26.08■■□□□ 1.77
NKX3-2P78367 SRD5A1P1-201ENST00000442297 786 ntBASIC26.08■■□□□ 1.77
NKX3-2P78367 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC26.07■■□□□ 1.76
NKX3-2P78367 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
NKX3-2P78367 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
NKX3-2P78367 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
NKX3-2P78367 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC26.07■■□□□ 1.76
NKX3-2P78367 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC26.07■■□□□ 1.76
NKX3-2P78367 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC26.07■■□□□ 1.76
NKX3-2P78367 AL355001.2-201ENST00000620617 1191 ntBASIC26.07■■□□□ 1.76
NKX3-2P78367 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
NKX3-2P78367 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
NKX3-2P78367 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC26.07■■□□□ 1.76
NKX3-2P78367 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC26.07■■□□□ 1.76
NKX3-2P78367 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
NKX3-2P78367 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC26.06■■□□□ 1.76
NKX3-2P78367 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC26.06■■□□□ 1.76
NKX3-2P78367 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC26.06■■□□□ 1.76
NKX3-2P78367 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC26.05■■□□□ 1.76
NKX3-2P78367 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
NKX3-2P78367 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
NKX3-2P78367 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
NKX3-2P78367 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC26.05■■□□□ 1.76
NKX3-2P78367 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
NKX3-2P78367 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
NKX3-2P78367 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC26.05■■□□□ 1.76
NKX3-2P78367 AC024257.2-201ENST00000549699 147 ntBASIC26.05■■□□□ 1.76
NKX3-2P78367 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC26.05■■□□□ 1.76
NKX3-2P78367 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC26.05■■□□□ 1.76
NKX3-2P78367 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
NKX3-2P78367 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
NKX3-2P78367 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
NKX3-2P78367 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC26.04■■□□□ 1.76
NKX3-2P78367 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
NKX3-2P78367 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC26.04■■□□□ 1.76
NKX3-2P78367 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC26.03■■□□□ 1.76
NKX3-2P78367 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC26.03■■□□□ 1.76
NKX3-2P78367 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC26.03■■□□□ 1.76
NKX3-2P78367 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
NKX3-2P78367 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
NKX3-2P78367 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC26.03■■□□□ 1.76
NKX3-2P78367 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
NKX3-2P78367 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
NKX3-2P78367 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
NKX3-2P78367 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
NKX3-2P78367 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC26.02■■□□□ 1.76
NKX3-2P78367 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
NKX3-2P78367 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
NKX3-2P78367 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC26.02■■□□□ 1.76
NKX3-2P78367 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
NKX3-2P78367 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
NKX3-2P78367 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
NKX3-2P78367 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC26.02■■□□□ 1.76
NKX3-2P78367 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
NKX3-2P78367 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
NKX3-2P78367 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC26.01■■□□□ 1.75
NKX3-2P78367 AL136967.2-201ENST00000623968 743 ntBASIC26.01■■□□□ 1.75
NKX3-2P78367 SF1-220ENST00000626028 704 ntTSL 2 BASIC26.01■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms