Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 MIR6724-4-201ENST00000617390 92 ntBASIC27.59■■■□□ 2.01
SHMT1P34896 MIR6724-3-201ENST00000622482 92 ntBASIC27.59■■■□□ 2.01
SHMT1P34896 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
SHMT1P34896 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC27.59■■■□□ 2.01
SHMT1P34896 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC27.59■■■□□ 2.01
SHMT1P34896 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
SHMT1P34896 PEMT-206ENST00000435340 960 ntTSL 5 BASIC27.58■■■□□ 2.01
SHMT1P34896 TRIR-202ENST00000588213 841 ntTSL 3 BASIC27.58■■■□□ 2.01
SHMT1P34896 EXOG-217ENST00000630638 197 ntTSL 5 BASIC27.58■■■□□ 2.01
SHMT1P34896 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
SHMT1P34896 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
SHMT1P34896 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC27.57■■■□□ 2
SHMT1P34896 AC131281.2-201ENST00000520478 145 ntBASIC27.57■■■□□ 2
SHMT1P34896 SNX5-217ENST00000606557 1087 ntBASIC27.57■■■□□ 2
SHMT1P34896 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC27.57■■■□□ 2
SHMT1P34896 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC27.57■■■□□ 2
SHMT1P34896 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC27.56■■■□□ 2
SHMT1P34896 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC27.56■■■□□ 2
SHMT1P34896 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC27.56■■■□□ 2
SHMT1P34896 MIR3621-201ENST00000580529 85 ntBASIC27.56■■■□□ 2
SHMT1P34896 SLC6A10P-202ENST00000431994 2058 ntBASIC27.56■■■□□ 2
SHMT1P34896 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC27.56■■■□□ 2
SHMT1P34896 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
SHMT1P34896 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC27.56■■■□□ 2
SHMT1P34896 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
SHMT1P34896 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
SHMT1P34896 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC27.55■■■□□ 2
SHMT1P34896 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
SHMT1P34896 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC27.55■■■□□ 2
SHMT1P34896 RPP21-222ENST00000433076 577 ntTSL 2 BASIC27.55■■■□□ 2
SHMT1P34896 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
SHMT1P34896 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC27.55■■■□□ 2
SHMT1P34896 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SHMT1P34896 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC27.54■■■□□ 2
SHMT1P34896 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC27.54■■■□□ 2
SHMT1P34896 SRR-208ENST00000576848 588 ntTSL 4 BASIC27.54■■■□□ 2
SHMT1P34896 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC27.54■■■□□ 2
SHMT1P34896 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC27.53■■■□□ 2
SHMT1P34896 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC27.53■■■□□ 2
SHMT1P34896 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC27.53■■■□□ 2
SHMT1P34896 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC27.53■■■□□ 2
SHMT1P34896 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC27.53■■■□□ 2
SHMT1P34896 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC27.53■■■□□ 2
SHMT1P34896 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC27.53■■■□□ 2
SHMT1P34896 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC27.53■■■□□ 2
SHMT1P34896 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
SHMT1P34896 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC27.53■■■□□ 2
SHMT1P34896 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
SHMT1P34896 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC27.52■■■□□ 2
SHMT1P34896 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC27.52■■■□□ 2
SHMT1P34896 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC27.52■■■□□ 2
SHMT1P34896 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC27.52■■■□□ 2
SHMT1P34896 CD72-202ENST00000378430 585 ntTSL 3 BASIC27.52■■■□□ 2
SHMT1P34896 LBH-205ENST00000407930 756 ntTSL 2 BASIC27.52■■■□□ 2
SHMT1P34896 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC27.52■■■□□ 2
SHMT1P34896 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC27.52■■■□□ 2
SHMT1P34896 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC27.52■■■□□ 2
SHMT1P34896 AC145676.1-201ENST00000514988 2004 ntBASIC27.51■■■□□ 2
SHMT1P34896 CLTA-206ENST00000466396 695 ntTSL 2 BASIC27.51■■□□□ 1.99
SHMT1P34896 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC27.51■■□□□ 1.99
SHMT1P34896 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC27.51■■□□□ 1.99
SHMT1P34896 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC27.51■■□□□ 1.99
SHMT1P34896 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC27.51■■□□□ 1.99
SHMT1P34896 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SHMT1P34896 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
SHMT1P34896 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC27.5■■□□□ 1.99
SHMT1P34896 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC27.5■■□□□ 1.99
SHMT1P34896 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
SHMT1P34896 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC27.49■■□□□ 1.99
SHMT1P34896 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
SHMT1P34896 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC27.49■■□□□ 1.99
SHMT1P34896 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
SHMT1P34896 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
SHMT1P34896 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC27.48■■□□□ 1.99
SHMT1P34896 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC27.48■■□□□ 1.99
SHMT1P34896 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC27.48■■□□□ 1.99
SHMT1P34896 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
SHMT1P34896 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC27.47■■□□□ 1.99
SHMT1P34896 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC27.47■■□□□ 1.99
SHMT1P34896 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC27.47■■□□□ 1.99
SHMT1P34896 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC27.47■■□□□ 1.99
SHMT1P34896 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC27.47■■□□□ 1.99
SHMT1P34896 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
SHMT1P34896 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SHMT1P34896 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
SHMT1P34896 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SHMT1P34896 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC27.46■■□□□ 1.99
SHMT1P34896 QDPR-206ENST00000508623 601 ntTSL 3 BASIC27.46■■□□□ 1.99
SHMT1P34896 MIR6722-201ENST00000617286 78 ntBASIC27.46■■□□□ 1.99
SHMT1P34896 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC27.46■■□□□ 1.99
SHMT1P34896 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC27.46■■□□□ 1.99
SHMT1P34896 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC27.46■■□□□ 1.99
SHMT1P34896 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC27.46■■□□□ 1.99
SHMT1P34896 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SHMT1P34896 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
SHMT1P34896 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
SHMT1P34896 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
SHMT1P34896 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC27.45■■□□□ 1.98
SHMT1P34896 AL356740.2-201ENST00000601559 647 ntBASIC27.45■■□□□ 1.98
SHMT1P34896 AL512631.2-201ENST00000604634 923 ntBASIC27.45■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms