Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC23.2■■□□□ 1.3
MSH3P20585 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH3P20585 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
MSH3P20585 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
MSH3P20585 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH3P20585 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.19■■□□□ 1.3
MSH3P20585 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH3P20585 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
MSH3P20585 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
MSH3P20585 AC103724.3-201ENST00000564481 992 ntBASIC23.19■■□□□ 1.3
MSH3P20585 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.19■■□□□ 1.3
MSH3P20585 THA1P-201ENST00000590384 1145 ntBASIC23.19■■□□□ 1.3
MSH3P20585 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH3P20585 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH3P20585 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH3P20585 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH3P20585 KRT18P24-201ENST00000344739 1156 ntBASIC23.18■■□□□ 1.3
MSH3P20585 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23.18■■□□□ 1.3
MSH3P20585 AC120024.1-201ENST00000562672 995 ntBASIC23.18■■□□□ 1.3
MSH3P20585 AC011551.1-201ENST00000614101 683 ntBASIC23.18■■□□□ 1.3
MSH3P20585 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC23.18■■□□□ 1.3
MSH3P20585 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.17■■□□□ 1.3
MSH3P20585 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
MSH3P20585 AC090877.2-201ENST00000558441 1738 ntBASIC23.17■■□□□ 1.3
MSH3P20585 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
MSH3P20585 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH3P20585 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.17■■□□□ 1.3
MSH3P20585 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC23.17■■□□□ 1.3
MSH3P20585 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
MSH3P20585 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
MSH3P20585 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH3P20585 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
MSH3P20585 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.16■■□□□ 1.3
MSH3P20585 AL031848.2-201ENST00000607670 837 ntBASIC23.16■■□□□ 1.3
MSH3P20585 MIR6089-201ENST00000616698 64 ntBASIC23.16■■□□□ 1.3
MSH3P20585 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC23.16■■□□□ 1.3
MSH3P20585 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH3P20585 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH3P20585 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
MSH3P20585 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH3P20585 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
MSH3P20585 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH3P20585 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC23.15■■□□□ 1.3
MSH3P20585 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
MSH3P20585 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC23.14■■□□□ 1.3
MSH3P20585 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
MSH3P20585 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.14■■□□□ 1.29
MSH3P20585 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
MSH3P20585 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.14■■□□□ 1.29
MSH3P20585 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
MSH3P20585 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC23.14■■□□□ 1.29
MSH3P20585 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC23.14■■□□□ 1.29
MSH3P20585 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
MSH3P20585 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC23.13■■□□□ 1.29
MSH3P20585 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
MSH3P20585 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
MSH3P20585 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
MSH3P20585 AC093323.1-202ENST00000635031 2045 ntBASIC23.13■■□□□ 1.29
MSH3P20585 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
MSH3P20585 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.12■■□□□ 1.29
MSH3P20585 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.12■■□□□ 1.29
MSH3P20585 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
MSH3P20585 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23.11■■□□□ 1.29
MSH3P20585 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
MSH3P20585 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
MSH3P20585 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
MSH3P20585 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
MSH3P20585 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
MSH3P20585 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.11■■□□□ 1.29
MSH3P20585 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
MSH3P20585 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
MSH3P20585 AC138932.3-201ENST00000567634 1902 ntBASIC23.1■■□□□ 1.29
MSH3P20585 AP003733.4-201ENST00000623785 1697 ntBASIC23.1■■□□□ 1.29
MSH3P20585 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
MSH3P20585 TK2-216ENST00000564917 1156 ntTSL 3 BASIC23.1■■□□□ 1.29
MSH3P20585 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.1■■□□□ 1.29
MSH3P20585 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
MSH3P20585 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.09■■□□□ 1.29
MSH3P20585 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH3P20585 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH3P20585 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH3P20585 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH3P20585 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.09■■□□□ 1.29
MSH3P20585 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
MSH3P20585 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC23.08■■□□□ 1.29
MSH3P20585 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH3P20585 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.08■■□□□ 1.29
MSH3P20585 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC23.07■■□□□ 1.28
MSH3P20585 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.07■■□□□ 1.28
MSH3P20585 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
MSH3P20585 MIR4281-201ENST00000580852 62 ntBASIC23.07■■□□□ 1.28
MSH3P20585 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH3P20585 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
MSH3P20585 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
MSH3P20585 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH3P20585 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
MSH3P20585 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH3P20585 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
MSH3P20585 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.06■■□□□ 1.28
MSH3P20585 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms