Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RAF1P04049 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
RAF1P04049 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
RAF1P04049 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
RAF1P04049 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RAF1P04049 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RAF1P04049 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.02■□□□□ 0.96
RAF1P04049 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.02■□□□□ 0.96
RAF1P04049 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RAF1P04049 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RAF1P04049 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RAF1P04049 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RAF1P04049 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RAF1P04049 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
RAF1P04049 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RAF1P04049 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
RAF1P04049 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RAF1P04049 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RAF1P04049 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.01■□□□□ 0.95
RAF1P04049 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RAF1P04049 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.01■□□□□ 0.95
RAF1P04049 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RAF1P04049 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21■□□□□ 0.95
RAF1P04049 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21■□□□□ 0.95
RAF1P04049 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
RAF1P04049 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21■□□□□ 0.95
RAF1P04049 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RAF1P04049 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21■□□□□ 0.95
RAF1P04049 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21■□□□□ 0.95
RAF1P04049 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
RAF1P04049 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
RAF1P04049 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21■□□□□ 0.95
RAF1P04049 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21■□□□□ 0.95
RAF1P04049 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RAF1P04049 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RAF1P04049 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
RAF1P04049 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAF1P04049 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAF1P04049 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RAF1P04049 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
RAF1P04049 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RAF1P04049 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
RAF1P04049 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAF1P04049 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAF1P04049 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RAF1P04049 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RAF1P04049 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RAF1P04049 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.98■□□□□ 0.95
RAF1P04049 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.98■□□□□ 0.95
RAF1P04049 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.98■□□□□ 0.95
RAF1P04049 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.98■□□□□ 0.95
RAF1P04049 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
RAF1P04049 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
RAF1P04049 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
RAF1P04049 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RAF1P04049 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RAF1P04049 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.97■□□□□ 0.95
RAF1P04049 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RAF1P04049 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
RAF1P04049 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
RAF1P04049 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.97■□□□□ 0.95
RAF1P04049 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RAF1P04049 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RAF1P04049 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RAF1P04049 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
RAF1P04049 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.96■□□□□ 0.95
RAF1P04049 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RAF1P04049 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RAF1P04049 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RAF1P04049 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RAF1P04049 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
RAF1P04049 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RAF1P04049 AC019171.1-201ENST00000601251 1056 ntBASIC20.96■□□□□ 0.95
RAF1P04049 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.96■□□□□ 0.95
RAF1P04049 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RAF1P04049 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RAF1P04049 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
RAF1P04049 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RAF1P04049 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RAF1P04049 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
RAF1P04049 AC239859.2-201ENST00000444165 318 ntBASIC20.95■□□□□ 0.94
RAF1P04049 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.95■□□□□ 0.94
RAF1P04049 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
RAF1P04049 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.95■□□□□ 0.94
RAF1P04049 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RAF1P04049 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.94■□□□□ 0.94
RAF1P04049 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RAF1P04049 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RAF1P04049 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RAF1P04049 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RAF1P04049 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.94■□□□□ 0.94
RAF1P04049 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RAF1P04049 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
RAF1P04049 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
RAF1P04049 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RAF1P04049 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RAF1P04049 Z92544.1-202ENST00000571933 1220 ntBASIC20.93■□□□□ 0.94
RAF1P04049 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RAF1P04049 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RAF1P04049 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms