Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MT-ND4P03905 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.2■□□□□ 0.82
MT-ND4P03905 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.2■□□□□ 0.82
MT-ND4P03905 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.2■□□□□ 0.82
MT-ND4P03905 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MT-ND4P03905 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
MT-ND4P03905 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MT-ND4P03905 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MT-ND4P03905 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
MT-ND4P03905 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
MT-ND4P03905 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
MT-ND4P03905 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MT-ND4P03905 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND4P03905 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.18■□□□□ 0.82
MT-ND4P03905 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.18■□□□□ 0.82
MT-ND4P03905 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND4P03905 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND4P03905 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND4P03905 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND4P03905 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.18■□□□□ 0.82
MT-ND4P03905 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND4P03905 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
MT-ND4P03905 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
MT-ND4P03905 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND4P03905 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND4P03905 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
MT-ND4P03905 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND4P03905 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
MT-ND4P03905 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MT-ND4P03905 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MT-ND4P03905 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.17■□□□□ 0.82
MT-ND4P03905 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MT-ND4P03905 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MT-ND4P03905 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MT-ND4P03905 ABCB10P4-201ENST00000566803 2184 ntBASIC20.17■□□□□ 0.82
MT-ND4P03905 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MT-ND4P03905 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MT-ND4P03905 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
MT-ND4P03905 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MT-ND4P03905 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
MT-ND4P03905 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MT-ND4P03905 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MT-ND4P03905 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.16■□□□□ 0.82
MT-ND4P03905 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
MT-ND4P03905 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MT-ND4P03905 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MT-ND4P03905 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MT-ND4P03905 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
MT-ND4P03905 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND4P03905 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND4P03905 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND4P03905 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND4P03905 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.15■□□□□ 0.82
MT-ND4P03905 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND4P03905 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND4P03905 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
MT-ND4P03905 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.15■□□□□ 0.82
MT-ND4P03905 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND4P03905 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND4P03905 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.15■□□□□ 0.82
MT-ND4P03905 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.15■□□□□ 0.82
MT-ND4P03905 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND4P03905 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
MT-ND4P03905 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MT-ND4P03905 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.14■□□□□ 0.81
MT-ND4P03905 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
MT-ND4P03905 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MT-ND4P03905 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.14■□□□□ 0.81
MT-ND4P03905 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MT-ND4P03905 AL117328.2-201ENST00000624617 1940 ntBASIC20.14■□□□□ 0.81
MT-ND4P03905 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.13■□□□□ 0.81
MT-ND4P03905 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MT-ND4P03905 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.13■□□□□ 0.81
MT-ND4P03905 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.13■□□□□ 0.81
MT-ND4P03905 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MT-ND4P03905 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MT-ND4P03905 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
MT-ND4P03905 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MT-ND4P03905 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MT-ND4P03905 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MT-ND4P03905 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.13■□□□□ 0.81
MT-ND4P03905 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
MT-ND4P03905 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MT-ND4P03905 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MT-ND4P03905 PVT1-219ENST00000523427 938 ntTSL 3 BASIC20.12■□□□□ 0.81
MT-ND4P03905 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MT-ND4P03905 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.12■□□□□ 0.81
MT-ND4P03905 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MT-ND4P03905 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MT-ND4P03905 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MT-ND4P03905 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MT-ND4P03905 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MT-ND4P03905 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MT-ND4P03905 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MT-ND4P03905 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MT-ND4P03905 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MT-ND4P03905 MIR639-201ENST00000384974 98 ntBASIC20.11■□□□□ 0.81
MT-ND4P03905 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MT-ND4P03905 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MT-ND4P03905 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms