Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
ABCA1O95477 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
ABCA1O95477 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ABCA1O95477 SHF-208ENST00000560734 1731 ntTSL 3 BASIC19.53■□□□□ 0.72
ABCA1O95477 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.53■□□□□ 0.72
ABCA1O95477 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.53■□□□□ 0.72
ABCA1O95477 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ABCA1O95477 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.53■□□□□ 0.72
ABCA1O95477 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.53■□□□□ 0.72
ABCA1O95477 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
ABCA1O95477 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.53■□□□□ 0.72
ABCA1O95477 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.53■□□□□ 0.72
ABCA1O95477 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ABCA1O95477 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC19.52■□□□□ 0.72
ABCA1O95477 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ABCA1O95477 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.52■□□□□ 0.72
ABCA1O95477 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ABCA1O95477 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
ABCA1O95477 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
ABCA1O95477 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ABCA1O95477 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.51■□□□□ 0.71
ABCA1O95477 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.51■□□□□ 0.71
ABCA1O95477 AC092666.2-201ENST00000613287 246 ntBASIC19.51■□□□□ 0.71
ABCA1O95477 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
ABCA1O95477 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC19.51■□□□□ 0.71
ABCA1O95477 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
ABCA1O95477 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ABCA1O95477 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
ABCA1O95477 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
ABCA1O95477 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.5■□□□□ 0.71
ABCA1O95477 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
ABCA1O95477 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
ABCA1O95477 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
ABCA1O95477 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.49■□□□□ 0.71
ABCA1O95477 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ABCA1O95477 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ABCA1O95477 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC19.49■□□□□ 0.71
ABCA1O95477 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
ABCA1O95477 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.49■□□□□ 0.71
ABCA1O95477 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.49■□□□□ 0.71
ABCA1O95477 AC104564.3-201ENST00000582367 638 ntBASIC19.49■□□□□ 0.71
ABCA1O95477 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC19.48■□□□□ 0.71
ABCA1O95477 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
ABCA1O95477 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ABCA1O95477 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.48■□□□□ 0.71
ABCA1O95477 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.48■□□□□ 0.71
ABCA1O95477 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.48■□□□□ 0.71
ABCA1O95477 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.48■□□□□ 0.71
ABCA1O95477 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.48■□□□□ 0.71
ABCA1O95477 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ABCA1O95477 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
ABCA1O95477 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
ABCA1O95477 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ABCA1O95477 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.48■□□□□ 0.71
ABCA1O95477 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.48■□□□□ 0.71
ABCA1O95477 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ABCA1O95477 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ABCA1O95477 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.47■□□□□ 0.71
ABCA1O95477 PBX2P1-201ENST00000493219 1291 ntBASIC19.47■□□□□ 0.71
ABCA1O95477 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.47■□□□□ 0.71
ABCA1O95477 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.47■□□□□ 0.71
ABCA1O95477 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.47■□□□□ 0.71
ABCA1O95477 MIR5787-201ENST00000611784 55 ntBASIC19.47■□□□□ 0.71
ABCA1O95477 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ABCA1O95477 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
ABCA1O95477 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ABCA1O95477 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ABCA1O95477 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.46■□□□□ 0.71
ABCA1O95477 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.46■□□□□ 0.71
ABCA1O95477 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.46■□□□□ 0.71
ABCA1O95477 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC19.46■□□□□ 0.71
ABCA1O95477 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
ABCA1O95477 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ABCA1O95477 AC142472.1-201ENST00000612013 1741 ntBASIC19.45■□□□□ 0.7
ABCA1O95477 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
ABCA1O95477 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ABCA1O95477 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
ABCA1O95477 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
ABCA1O95477 AC135279.3-201ENST00000610945 1311 ntBASIC19.45■□□□□ 0.7
ABCA1O95477 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ABCA1O95477 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ABCA1O95477 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
ABCA1O95477 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.44■□□□□ 0.7
ABCA1O95477 SNX5-217ENST00000606557 1087 ntBASIC19.44■□□□□ 0.7
ABCA1O95477 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ABCA1O95477 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.44■□□□□ 0.7
ABCA1O95477 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
ABCA1O95477 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ABCA1O95477 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ABCA1O95477 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ABCA1O95477 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
ABCA1O95477 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC19.44■□□□□ 0.7
ABCA1O95477 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
ABCA1O95477 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ABCA1O95477 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ABCA1O95477 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ABCA1O95477 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ABCA1O95477 EDA-201ENST00000338901 1233 ntBASIC19.42■□□□□ 0.7
ABCA1O95477 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.42■□□□□ 0.7
ABCA1O95477 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms