Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC31.15■■■□□ 2.58
MSH5O43196 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC31.15■■■□□ 2.58
MSH5O43196 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
MSH5O43196 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC31.15■■■□□ 2.58
MSH5O43196 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC31.15■■■□□ 2.58
MSH5O43196 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
MSH5O43196 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
MSH5O43196 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
MSH5O43196 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC31.15■■■□□ 2.58
MSH5O43196 AP002414.2-202ENST00000590929 1450 ntBASIC31.14■■■□□ 2.58
MSH5O43196 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
MSH5O43196 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
MSH5O43196 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
MSH5O43196 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC31.14■■■□□ 2.58
MSH5O43196 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC31.14■■■□□ 2.58
MSH5O43196 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
MSH5O43196 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC31.13■■■□□ 2.57
MSH5O43196 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC31.13■■■□□ 2.57
MSH5O43196 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
MSH5O43196 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
MSH5O43196 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC31.13■■■□□ 2.57
MSH5O43196 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC31.13■■■□□ 2.57
MSH5O43196 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
MSH5O43196 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC31.12■■■□□ 2.57
MSH5O43196 SRR-208ENST00000576848 588 ntTSL 4 BASIC31.12■■■□□ 2.57
MSH5O43196 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
MSH5O43196 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC31.12■■■□□ 2.57
MSH5O43196 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
MSH5O43196 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
MSH5O43196 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC31.11■■■□□ 2.57
MSH5O43196 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC31.11■■■□□ 2.57
MSH5O43196 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
MSH5O43196 AL136116.3-201ENST00000402907 1138 ntBASIC31.11■■■□□ 2.57
MSH5O43196 AC131281.2-201ENST00000520478 145 ntBASIC31.11■■■□□ 2.57
MSH5O43196 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
MSH5O43196 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC31.11■■■□□ 2.57
MSH5O43196 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC31.1■■■□□ 2.57
MSH5O43196 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
MSH5O43196 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC31.1■■■□□ 2.57
MSH5O43196 RN7SL275P-201ENST00000582762 335 ntBASIC31.1■■■□□ 2.57
MSH5O43196 AC244517.3-201ENST00000616254 1235 ntBASIC31.1■■■□□ 2.57
MSH5O43196 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC31.1■■■□□ 2.57
MSH5O43196 CEBPA-AS1-201ENST00000592982 2198 ntBASIC31.09■■■□□ 2.57
MSH5O43196 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
MSH5O43196 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
MSH5O43196 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
MSH5O43196 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
MSH5O43196 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
MSH5O43196 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
MSH5O43196 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
MSH5O43196 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
MSH5O43196 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC31.08■■■□□ 2.57
MSH5O43196 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC31.08■■■□□ 2.57
MSH5O43196 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC31.08■■■□□ 2.57
MSH5O43196 RPP21-222ENST00000433076 577 ntTSL 2 BASIC31.08■■■□□ 2.57
MSH5O43196 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC31.08■■■□□ 2.57
MSH5O43196 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
MSH5O43196 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC31.08■■■□□ 2.57
MSH5O43196 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC31.07■■■□□ 2.56
MSH5O43196 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
MSH5O43196 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
MSH5O43196 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC31.07■■■□□ 2.56
MSH5O43196 AC022616.5-201ENST00000518796 181 ntBASIC31.07■■■□□ 2.56
MSH5O43196 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC31.07■■■□□ 2.56
MSH5O43196 AC108359.1-201ENST00000616451 1211 ntBASIC31.07■■■□□ 2.56
MSH5O43196 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
MSH5O43196 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC31.06■■■□□ 2.56
MSH5O43196 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
MSH5O43196 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC31.06■■■□□ 2.56
MSH5O43196 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
MSH5O43196 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
MSH5O43196 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC31.06■■■□□ 2.56
MSH5O43196 MTND2P7-201ENST00000521337 640 ntBASIC31.06■■■□□ 2.56
MSH5O43196 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC31.06■■■□□ 2.56
MSH5O43196 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
MSH5O43196 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC31.05■■■□□ 2.56
MSH5O43196 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC31.05■■■□□ 2.56
MSH5O43196 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC31.05■■■□□ 2.56
MSH5O43196 PAX6-247ENST00000638965 979 ntTSL 5 BASIC31.05■■■□□ 2.56
MSH5O43196 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
MSH5O43196 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
MSH5O43196 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC31.04■■■□□ 2.56
MSH5O43196 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
MSH5O43196 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC31.04■■■□□ 2.56
MSH5O43196 WHAMMP3-201ENST00000611636 1609 ntBASIC31.04■■■□□ 2.56
MSH5O43196 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
MSH5O43196 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
MSH5O43196 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC31.03■■■□□ 2.56
MSH5O43196 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC31.03■■■□□ 2.56
MSH5O43196 KRT18P24-201ENST00000344739 1156 ntBASIC31.03■■■□□ 2.56
MSH5O43196 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC31.03■■■□□ 2.56
MSH5O43196 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC31.03■■■□□ 2.56
MSH5O43196 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC31.03■■■□□ 2.56
MSH5O43196 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
MSH5O43196 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC31.02■■■□□ 2.56
MSH5O43196 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
MSH5O43196 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC31.01■■■□□ 2.56
MSH5O43196 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
MSH5O43196 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
MSH5O43196 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC31.01■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms