Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.47■■□□□ 1.03
CPSF4LA6NMK7 RNF126P1-201ENST00000567452 1320 ntBASIC21.47■■□□□ 1.03
CPSF4LA6NMK7 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CPSF4LA6NMK7 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CPSF4LA6NMK7 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CPSF4LA6NMK7 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CPSF4LA6NMK7 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.46■■□□□ 1.03
CPSF4LA6NMK7 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CPSF4LA6NMK7 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CPSF4LA6NMK7 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CPSF4LA6NMK7 HLA-L-211ENST00000482052 1765 ntBASIC21.46■■□□□ 1.03
CPSF4LA6NMK7 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CPSF4LA6NMK7 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CPSF4LA6NMK7 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CPSF4LA6NMK7 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CPSF4LA6NMK7 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CPSF4LA6NMK7 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.45■■□□□ 1.02
CPSF4LA6NMK7 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CPSF4LA6NMK7 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CPSF4LA6NMK7 AC004812.2-201ENST00000611079 2094 ntBASIC21.44■■□□□ 1.02
CPSF4LA6NMK7 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.44■■□□□ 1.02
CPSF4LA6NMK7 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC21.44■■□□□ 1.02
CPSF4LA6NMK7 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.44■■□□□ 1.02
CPSF4LA6NMK7 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CPSF4LA6NMK7 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CPSF4LA6NMK7 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4LA6NMK7 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CPSF4LA6NMK7 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.42■■□□□ 1.02
CPSF4LA6NMK7 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CPSF4LA6NMK7 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
CPSF4LA6NMK7 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CPSF4LA6NMK7 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CPSF4LA6NMK7 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CPSF4LA6NMK7 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CPSF4LA6NMK7 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CPSF4LA6NMK7 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CPSF4LA6NMK7 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CPSF4LA6NMK7 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CPSF4LA6NMK7 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CPSF4LA6NMK7 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CPSF4LA6NMK7 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CPSF4LA6NMK7 AL592293.1-201ENST00000502889 1188 ntBASIC21.4■■□□□ 1.02
CPSF4LA6NMK7 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CPSF4LA6NMK7 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CPSF4LA6NMK7 ABCB10P4-201ENST00000566803 2184 ntBASIC21.4■■□□□ 1.02
CPSF4LA6NMK7 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
CPSF4LA6NMK7 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CPSF4LA6NMK7 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.4■■□□□ 1.02
CPSF4LA6NMK7 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
CPSF4LA6NMK7 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CPSF4LA6NMK7 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CPSF4LA6NMK7 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
CPSF4LA6NMK7 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
CPSF4LA6NMK7 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CPSF4LA6NMK7 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.38■■□□□ 1.01
CPSF4LA6NMK7 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CPSF4LA6NMK7 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CPSF4LA6NMK7 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CPSF4LA6NMK7 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
CPSF4LA6NMK7 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.38■■□□□ 1.01
CPSF4LA6NMK7 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
CPSF4LA6NMK7 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CPSF4LA6NMK7 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
CPSF4LA6NMK7 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.38■■□□□ 1.01
CPSF4LA6NMK7 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CPSF4LA6NMK7 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.37■■□□□ 1.01
CPSF4LA6NMK7 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.37■■□□□ 1.01
CPSF4LA6NMK7 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
CPSF4LA6NMK7 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4LA6NMK7 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.36■■□□□ 1.01
CPSF4LA6NMK7 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4LA6NMK7 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4LA6NMK7 SPCS2P3-201ENST00000500401 656 ntBASIC21.36■■□□□ 1.01
CPSF4LA6NMK7 AC018755.3-202ENST00000596210 929 ntBASIC21.36■■□□□ 1.01
CPSF4LA6NMK7 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CPSF4LA6NMK7 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4LA6NMK7 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4LA6NMK7 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4LA6NMK7 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.36■■□□□ 1.01
CPSF4LA6NMK7 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4LA6NMK7 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.36■■□□□ 1.01
CPSF4LA6NMK7 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.36■■□□□ 1.01
CPSF4LA6NMK7 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.35■■□□□ 1.01
CPSF4LA6NMK7 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms