Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 AC126177.1-201ENST00000547829 2218 ntBASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 AL844908.2-201ENST00000609461 460 ntBASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 AL390754.1-201ENST00000619088 582 ntBASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.36■□□□□ 0.21
AP4E1Q9UPM8 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 TSPY26P-202ENST00000565928 3884 ntBASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 PMS2P2-201ENST00000425039 1128 ntBASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 AL590560.3-201ENST00000623350 461 ntBASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 AL109936.8-201ENST00000641772 604 ntBASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.35■□□□□ 0.21
AP4E1Q9UPM8 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 AC104640.1-201ENST00000562617 2109 ntBASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms