Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC39Q9UFE4 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC39Q9UFE4 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC39Q9UFE4 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC18.33■□□□□ 0.53
CCDC39Q9UFE4 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC39Q9UFE4 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
CCDC39Q9UFE4 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC18.33■□□□□ 0.53
CCDC39Q9UFE4 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC39Q9UFE4 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC39Q9UFE4 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC39Q9UFE4 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC39Q9UFE4 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 AL135744.1-201ENST00000565098 629 ntBASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 MTDHP5-201ENST00000598980 586 ntBASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC39Q9UFE4 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 AL390755.1-201ENST00000623716 2027 ntBASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 LINC00552-201ENST00000625151 2579 ntBASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 ACTG1P14-201ENST00000446382 1122 ntBASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 RN7SL589P-201ENST00000481268 310 ntBASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 AC105233.2-201ENST00000523697 349 ntBASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 AF228730.5-201ENST00000530288 346 ntBASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 AC073389.1-201ENST00000595595 795 ntBASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 C20orf181-201ENST00000623918 480 ntBASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CCDC39Q9UFE4 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC39Q9UFE4 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms