Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 AC067930.6-201ENST00000623257 4947 ntBASIC14.19□□□□□ -0.14
CPNE4Q96A23 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 AC099063.4-201ENST00000641099 1602 ntBASIC14.19□□□□□ -0.14
CPNE4Q96A23 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.19□□□□□ -0.14
CPNE4Q96A23 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 TIMM17BP1-201ENST00000545713 516 ntBASIC14.19□□□□□ -0.14
CPNE4Q96A23 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 AC004840.1-201ENST00000636359 365 ntBASIC14.19□□□□□ -0.14
CPNE4Q96A23 LINC02228-204ENST00000642115 2962 ntBASIC14.19□□□□□ -0.14
CPNE4Q96A23 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.19□□□□□ -0.14
CPNE4Q96A23 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CPNE4Q96A23 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 TARDBPP1-201ENST00000442013 1203 ntBASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms