Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 AL590640.2-201ENST00000457038 527 ntBASIC19.42■□□□□ 0.7
SYNE4Q8N205 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 AL603832.2-201ENST00000566195 2125 ntBASIC19.42■□□□□ 0.7
SYNE4Q8N205 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE4Q8N205 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE4Q8N205 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE4Q8N205 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE4Q8N205 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE4Q8N205 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE4Q8N205 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SYNE4Q8N205 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SYNE4Q8N205 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE4Q8N205 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE4Q8N205 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE4Q8N205 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE4Q8N205 SUN1-204ENST00000403868 978 ntTSL 2 BASIC19.41■□□□□ 0.7
SYNE4Q8N205 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC19.41■□□□□ 0.7
SYNE4Q8N205 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE4Q8N205 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SYNE4Q8N205 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC19.41■□□□□ 0.7
SYNE4Q8N205 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC19.41■□□□□ 0.7
SYNE4Q8N205 AC025181.2-201ENST00000606994 802 ntBASIC19.41■□□□□ 0.7
SYNE4Q8N205 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC19.41■□□□□ 0.7
SYNE4Q8N205 PPA1-206ENST00000625364 644 ntTSL 5 BASIC19.41■□□□□ 0.7
SYNE4Q8N205 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE4Q8N205 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SYNE4Q8N205 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC19.41■□□□□ 0.7
SYNE4Q8N205 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.41■□□□□ 0.7
SYNE4Q8N205 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE4Q8N205 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SYNE4Q8N205 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SYNE4Q8N205 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC19.4■□□□□ 0.7
SYNE4Q8N205 AC090340.1-201ENST00000620778 4980 ntBASIC19.4■□□□□ 0.7
SYNE4Q8N205 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC19.4■□□□□ 0.7
SYNE4Q8N205 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC19.4■□□□□ 0.7
SYNE4Q8N205 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC19.4■□□□□ 0.7
SYNE4Q8N205 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC19.4■□□□□ 0.7
SYNE4Q8N205 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC19.4■□□□□ 0.7
SYNE4Q8N205 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC19.4■□□□□ 0.7
SYNE4Q8N205 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC19.4■□□□□ 0.7
SYNE4Q8N205 HNRNPA1P48-202ENST00000565308 961 ntBASIC19.4■□□□□ 0.7
SYNE4Q8N205 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 AP005019.2-201ENST00000615104 511 ntBASIC19.4■□□□□ 0.7
SYNE4Q8N205 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC19.4■□□□□ 0.7
SYNE4Q8N205 ABBA01031663.1-201ENST00000635630 790 ntBASIC19.4■□□□□ 0.7
SYNE4Q8N205 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC19.4■□□□□ 0.7
SYNE4Q8N205 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19.4■□□□□ 0.7
SYNE4Q8N205 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC19.4■□□□□ 0.7
SYNE4Q8N205 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE4Q8N205 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC19.4■□□□□ 0.7
SYNE4Q8N205 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SYNE4Q8N205 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC19.4■□□□□ 0.7
SYNE4Q8N205 AC148477.4-201ENST00000613430 1793 ntBASIC19.39■□□□□ 0.7
SYNE4Q8N205 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC19.39■□□□□ 0.7
SYNE4Q8N205 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
SYNE4Q8N205 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE4Q8N205 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE4Q8N205 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE4Q8N205 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE4Q8N205 PCDHB19P-201ENST00000570871 2371 ntBASIC19.39■□□□□ 0.69
SYNE4Q8N205 AC006001.1-201ENST00000325130 474 ntBASIC19.39■□□□□ 0.69
SYNE4Q8N205 RNU1-114P-201ENST00000365297 166 ntBASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms