Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.9□□□□□ -0.02
SOX3P41225 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 AC112504.1-201ENST00000623415 1841 ntBASIC14.9□□□□□ -0.02
SOX3P41225 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.9□□□□□ -0.02
SOX3P41225 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 RPL37AP1-201ENST00000412502 279 ntBASIC14.9□□□□□ -0.02
SOX3P41225 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.9□□□□□ -0.02
SOX3P41225 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.9□□□□□ -0.02
SOX3P41225 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.9□□□□□ -0.02
SOX3P41225 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.9□□□□□ -0.02
SOX3P41225 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
SOX3P41225 AL079307.3-201ENST00000556114 283 ntBASIC14.9□□□□□ -0.02
SOX3P41225 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.9□□□□□ -0.02
SOX3P41225 AC092364.2-202ENST00000597012 1073 ntBASIC14.9□□□□□ -0.02
SOX3P41225 AJ011932.1-201ENST00000621707 465 ntBASIC14.9□□□□□ -0.02
SOX3P41225 AL590560.3-201ENST00000623350 461 ntBASIC14.9□□□□□ -0.02
SOX3P41225 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
SOX3P41225 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.9□□□□□ -0.02
SOX3P41225 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
SOX3P41225 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
SOX3P41225 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.9□□□□□ -0.02
SOX3P41225 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.9□□□□□ -0.02
SOX3P41225 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.89□□□□□ -0.03
SOX3P41225 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
SOX3P41225 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SOX3P41225 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.89□□□□□ -0.03
SOX3P41225 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.89□□□□□ -0.03
SOX3P41225 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.89□□□□□ -0.03
SOX3P41225 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.89□□□□□ -0.03
SOX3P41225 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
SOX3P41225 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.89□□□□□ -0.03
SOX3P41225 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.89□□□□□ -0.03
SOX3P41225 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
SOX3P41225 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.89□□□□□ -0.03
SOX3P41225 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.89□□□□□ -0.03
SOX3P41225 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.89□□□□□ -0.03
SOX3P41225 TEX28P1-201ENST00000613479 1221 ntBASIC14.89□□□□□ -0.03
SOX3P41225 TEX28P2-201ENST00000617764 1221 ntBASIC14.89□□□□□ -0.03
SOX3P41225 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
SOX3P41225 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX3P41225 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.88□□□□□ -0.03
SOX3P41225 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SOX3P41225 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
SOX3P41225 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.88□□□□□ -0.03
SOX3P41225 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.88□□□□□ -0.03
SOX3P41225 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SOX3P41225 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SOX3P41225 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.88□□□□□ -0.03
SOX3P41225 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms