Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC16.08■□□□□ 0.16
COL9A1P20849 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC16.08■□□□□ 0.16
COL9A1P20849 AC079791.1-201ENST00000605356 973 ntBASIC16.08■□□□□ 0.16
COL9A1P20849 AL353622.2-201ENST00000605846 425 ntBASIC16.08■□□□□ 0.16
COL9A1P20849 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.08■□□□□ 0.16
COL9A1P20849 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL9A1P20849 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC16.08■□□□□ 0.16
COL9A1P20849 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.08■□□□□ 0.16
COL9A1P20849 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL9A1P20849 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
COL9A1P20849 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL9A1P20849 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.08■□□□□ 0.16
COL9A1P20849 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL9A1P20849 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.08■□□□□ 0.16
COL9A1P20849 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL9A1P20849 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL9A1P20849 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL9A1P20849 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL9A1P20849 ALOX12P2-203ENST00000570921 1945 ntBASIC16.07■□□□□ 0.16
COL9A1P20849 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
COL9A1P20849 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.07■□□□□ 0.16
COL9A1P20849 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL9A1P20849 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.07■□□□□ 0.16
COL9A1P20849 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
COL9A1P20849 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
COL9A1P20849 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
COL9A1P20849 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL9A1P20849 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL9A1P20849 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
COL9A1P20849 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL9A1P20849 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL9A1P20849 CRCP-204ENST00000398684 492 ntTSL 2 BASIC16.07■□□□□ 0.16
COL9A1P20849 MIR1202-201ENST00000408529 83 ntBASIC16.07■□□□□ 0.16
COL9A1P20849 KRT18P64-201ENST00000434946 1219 ntBASIC16.07■□□□□ 0.16
COL9A1P20849 BUD31-205ENST00000456893 512 ntTSL 5 BASIC16.07■□□□□ 0.16
COL9A1P20849 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.07■□□□□ 0.16
COL9A1P20849 IGHEP1-201ENST00000521393 651 ntBASIC16.07■□□□□ 0.16
COL9A1P20849 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.07■□□□□ 0.16
COL9A1P20849 C2orf69P1-201ENST00000563532 1093 ntBASIC16.07■□□□□ 0.16
COL9A1P20849 AC025279.2-201ENST00000569730 653 ntBASIC16.07■□□□□ 0.16
COL9A1P20849 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC16.07■□□□□ 0.16
COL9A1P20849 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.07■□□□□ 0.16
COL9A1P20849 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC16.07■□□□□ 0.16
COL9A1P20849 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
COL9A1P20849 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.07■□□□□ 0.16
COL9A1P20849 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.07■□□□□ 0.16
COL9A1P20849 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL9A1P20849 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
COL9A1P20849 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL9A1P20849 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.07■□□□□ 0.16
COL9A1P20849 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
COL9A1P20849 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
COL9A1P20849 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL9A1P20849 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL9A1P20849 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
COL9A1P20849 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
COL9A1P20849 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL9A1P20849 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL9A1P20849 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
COL9A1P20849 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
COL9A1P20849 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.06■□□□□ 0.16
COL9A1P20849 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
COL9A1P20849 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.06■□□□□ 0.16
COL9A1P20849 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.06■□□□□ 0.16
COL9A1P20849 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.06■□□□□ 0.16
COL9A1P20849 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.06■□□□□ 0.16
COL9A1P20849 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
COL9A1P20849 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.06■□□□□ 0.16
COL9A1P20849 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.06■□□□□ 0.16
COL9A1P20849 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC16.06■□□□□ 0.16
COL9A1P20849 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC16.06■□□□□ 0.16
COL9A1P20849 RPL7P35-201ENST00000446943 740 ntBASIC16.06■□□□□ 0.16
COL9A1P20849 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.06■□□□□ 0.16
COL9A1P20849 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.06■□□□□ 0.16
COL9A1P20849 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC16.06■□□□□ 0.16
COL9A1P20849 AC004672.2-201ENST00000537181 574 ntTSL 2 BASIC16.06■□□□□ 0.16
COL9A1P20849 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.06■□□□□ 0.16
COL9A1P20849 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC16.06■□□□□ 0.16
COL9A1P20849 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC16.06■□□□□ 0.16
COL9A1P20849 PTPN20CP-201ENST00000614090 920 ntBASIC16.06■□□□□ 0.16
COL9A1P20849 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
COL9A1P20849 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.06■□□□□ 0.16
COL9A1P20849 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL9A1P20849 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms