Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CCDC188H7C350 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.43■□□□□ 0.22
CCDC188H7C350 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC16.43■□□□□ 0.22
CCDC188H7C350 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CCDC188H7C350 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC188H7C350 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC188H7C350 FOXO1B-201ENST00000504678 1527 ntBASIC16.43■□□□□ 0.22
CCDC188H7C350 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC188H7C350 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC188H7C350 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC188H7C350 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC188H7C350 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC188H7C350 AC007686.3-201ENST00000619017 3487 ntBASIC16.43■□□□□ 0.22
CCDC188H7C350 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.43■□□□□ 0.22
CCDC188H7C350 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC188H7C350 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC188H7C350 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CCDC188H7C350 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC188H7C350 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.42■□□□□ 0.22
CCDC188H7C350 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.42■□□□□ 0.22
CCDC188H7C350 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.42■□□□□ 0.22
CCDC188H7C350 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 AC126755.1-201ENST00000525846 6405 ntBASIC16.42■□□□□ 0.22
CCDC188H7C350 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC16.42■□□□□ 0.22
CCDC188H7C350 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.42■□□□□ 0.22
CCDC188H7C350 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC188H7C350 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CCDC188H7C350 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.42■□□□□ 0.22
CCDC188H7C350 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.42■□□□□ 0.22
CCDC188H7C350 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC188H7C350 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.42■□□□□ 0.22
CCDC188H7C350 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.42■□□□□ 0.22
CCDC188H7C350 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.42■□□□□ 0.22
CCDC188H7C350 AL773604.1-201ENST00000617417 272 ntBASIC16.42■□□□□ 0.22
CCDC188H7C350 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.42■□□□□ 0.22
CCDC188H7C350 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.42■□□□□ 0.22
CCDC188H7C350 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
CCDC188H7C350 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 BCAR1-209ENST00000546196 1340 ntBASIC16.42■□□□□ 0.22
CCDC188H7C350 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC188H7C350 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC188H7C350 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CCDC188H7C350 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC188H7C350 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC188H7C350 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC188H7C350 AL138918.1-201ENST00000568306 659 ntBASIC16.41■□□□□ 0.22
CCDC188H7C350 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC188H7C350 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
CCDC188H7C350 AL049840.3-201ENST00000602669 611 ntBASIC16.41■□□□□ 0.22
CCDC188H7C350 AL031008.1-201ENST00000619963 541 ntBASIC16.41■□□□□ 0.22
CCDC188H7C350 AC004877.2-201ENST00000623941 599 ntBASIC16.41■□□□□ 0.22
CCDC188H7C350 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CCDC188H7C350 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.41■□□□□ 0.22
CCDC188H7C350 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CCDC188H7C350 OR2I1P-209ENST00000641730 5365 ntBASIC16.41■□□□□ 0.22
CCDC188H7C350 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC16.41■□□□□ 0.22
CCDC188H7C350 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC188H7C350 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC188H7C350 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC188H7C350 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms