Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 AC104596.2-201ENST00000512793 793 ntBASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 AC099568.2-201ENST00000609194 695 ntBASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 AL158212.4-201ENST00000624062 1286 ntBASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 AL607033.1-201ENST00000623900 1599 ntBASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 AC132938.2-201ENST00000579188 680 ntBASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 AL591163.1-201ENST00000641757 987 ntBASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 MTHFR-217ENST00000641820 1569 ntBASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC19.73■□□□□ 0.75
CHMP3Q9Y3E7 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 DEK-201ENST00000244776 1441 ntTSL 2 BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 CDC14C-201ENST00000428251 1719 ntBASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 USP40-206ENST00000443711 628 ntTSL 2 BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 IGHV3-72-202ENST00000621503 303 ntBASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP3Q9Y3E7 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 GK-202ENST00000378941 458 ntTSL 3 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 NAA50-208ENST00000497255 789 ntTSL 5 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 AC011495.1-201ENST00000498085 584 ntBASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 AC036164.1-201ENST00000570544 333 ntBASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms