Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 AC092580.3-201ENST00000430932 139 ntBASIC16.88■□□□□ 0.29
SIX2Q9NPC8 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 CNN2P2-201ENST00000443536 909 ntBASIC16.88■□□□□ 0.29
SIX2Q9NPC8 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 CNN2P3-201ENST00000450201 906 ntBASIC16.88■□□□□ 0.29
SIX2Q9NPC8 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 SERBP1P3-201ENST00000459980 809 ntBASIC16.88■□□□□ 0.29
SIX2Q9NPC8 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 AL136317.3-201ENST00000618497 906 ntBASIC16.88■□□□□ 0.29
SIX2Q9NPC8 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 CICP11-201ENST00000434745 2827 ntBASIC16.87■□□□□ 0.29
SIX2Q9NPC8 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 AC015910.1-201ENST00000579400 975 ntBASIC16.87■□□□□ 0.29
SIX2Q9NPC8 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 AC093028.1-201ENST00000622998 982 ntBASIC16.87■□□□□ 0.29
SIX2Q9NPC8 AC073592.8-201ENST00000624126 511 ntBASIC16.87■□□□□ 0.29
SIX2Q9NPC8 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms