Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.92■□□□□ 0.14
TRIM4Q9C037 TFAMP1-201ENST00000412727 736 ntBASIC15.92■□□□□ 0.14
TRIM4Q9C037 BASP1P1-201ENST00000430708 665 ntBASIC15.92■□□□□ 0.14
TRIM4Q9C037 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.92■□□□□ 0.14
TRIM4Q9C037 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM4Q9C037 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC15.92■□□□□ 0.14
TRIM4Q9C037 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.92■□□□□ 0.14
TRIM4Q9C037 AP002490.2-201ENST00000524791 560 ntBASIC15.92■□□□□ 0.14
TRIM4Q9C037 AP005018.1-201ENST00000525475 301 ntBASIC15.92■□□□□ 0.14
TRIM4Q9C037 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
TRIM4Q9C037 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.92■□□□□ 0.14
TRIM4Q9C037 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM4Q9C037 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.92■□□□□ 0.14
TRIM4Q9C037 AL359881.2-201ENST00000602973 570 ntBASIC15.92■□□□□ 0.14
TRIM4Q9C037 AC008667.4-201ENST00000607370 168 ntBASIC15.92■□□□□ 0.14
TRIM4Q9C037 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM4Q9C037 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
TRIM4Q9C037 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM4Q9C037 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM4Q9C037 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
TRIM4Q9C037 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM4Q9C037 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM4Q9C037 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM4Q9C037 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.92■□□□□ 0.14
TRIM4Q9C037 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM4Q9C037 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM4Q9C037 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM4Q9C037 ALOX12P2-203ENST00000570921 1945 ntBASIC15.92■□□□□ 0.14
TRIM4Q9C037 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM4Q9C037 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM4Q9C037 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM4Q9C037 MTHFR-217ENST00000641820 1569 ntBASIC15.92■□□□□ 0.14
TRIM4Q9C037 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM4Q9C037 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 UGT1A2P-201ENST00000454886 866 ntBASIC15.91■□□□□ 0.14
TRIM4Q9C037 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 AC013467.2-201ENST00000605472 835 ntBASIC15.91■□□□□ 0.14
TRIM4Q9C037 AC010654.1-201ENST00000615722 808 ntBASIC15.91■□□□□ 0.14
TRIM4Q9C037 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM4Q9C037 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM4Q9C037 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
TRIM4Q9C037 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM4Q9C037 AC006277.1-201ENST00000624348 1610 ntBASIC15.9■□□□□ 0.14
TRIM4Q9C037 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM4Q9C037 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM4Q9C037 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TRIM4Q9C037 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM4Q9C037 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms