Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 RAD18-204ENST00000418463 563 ntTSL 4 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 RAD18-205ENST00000421052 582 ntTSL 3 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 PMS2P2-201ENST00000425039 1128 ntBASIC12.21□□□□□ -0.45
CCDC140Q96MF4 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 CMC2-214ENST00000565925 640 ntTSL 5 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 AC074044.1-201ENST00000609673 707 ntBASIC12.21□□□□□ -0.45
CCDC140Q96MF4 AL590560.3-201ENST00000623350 461 ntBASIC12.21□□□□□ -0.45
CCDC140Q96MF4 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC12.21□□□□□ -0.46
CCDC140Q96MF4 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
CCDC140Q96MF4 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
CCDC140Q96MF4 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.46
CCDC140Q96MF4 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC12.21□□□□□ -0.46
CCDC140Q96MF4 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
CCDC140Q96MF4 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
CCDC140Q96MF4 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
CCDC140Q96MF4 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
CCDC140Q96MF4 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC12.21□□□□□ -0.46
CCDC140Q96MF4 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.46
CCDC140Q96MF4 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 VMA21-202ENST00000370361 693 ntTSL 5 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 GGCT-205ENST00000409436 954 ntTSL 3 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 TSSK5P-201ENST00000423978 907 ntBASIC12.2□□□□□ -0.46
CCDC140Q96MF4 AC241585.1-201ENST00000433527 519 ntBASIC12.2□□□□□ -0.46
CCDC140Q96MF4 USP40-206ENST00000443711 628 ntTSL 2 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 RFPL4AP1-201ENST00000530883 850 ntBASIC12.2□□□□□ -0.46
CCDC140Q96MF4 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 LINC01115-203ENST00000606068 577 ntBASIC12.2□□□□□ -0.46
CCDC140Q96MF4 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 AL109936.8-201ENST00000641772 604 ntBASIC12.2□□□□□ -0.46
CCDC140Q96MF4 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms