Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 AC087499.5-201ENST00000452760 1342 ntBASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 MST1L-201ENST00000442552 2185 ntBASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 AL589987.1-201ENST00000453380 819 ntBASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 MIR6799-201ENST00000620297 69 ntBASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 C18orf15-201ENST00000623680 2534 ntBASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 TPRX2P-201ENST00000535362 881 ntBASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 AC138035.3-201ENST00000622706 2791 ntBASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SHROOM3Q8TF72 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 SERBP1P5-201ENST00000510079 1181 ntBASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms