Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 AP001063.1-201ENST00000568332 529 ntBASIC15.32■□□□□ 0.04
LMX1AQ8TE12 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 AC134312.5-201ENST00000568031 1313 ntBASIC15.32■□□□□ 0.04
LMX1AQ8TE12 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 REXO1L6P-201ENST00000603433 1515 ntBASIC15.32■□□□□ 0.04
LMX1AQ8TE12 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 AC093433.1-201ENST00000458048 571 ntBASIC15.31■□□□□ 0.04
LMX1AQ8TE12 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 AC005252.2-201ENST00000624630 1141 ntBASIC15.31■□□□□ 0.04
LMX1AQ8TE12 AC093525.8-201ENST00000624099 1342 ntBASIC15.31■□□□□ 0.04
LMX1AQ8TE12 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 AC068587.6-202ENST00000641839 5619 ntBASIC15.31■□□□□ 0.04
LMX1AQ8TE12 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.31■□□□□ 0.04
LMX1AQ8TE12 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 AC007551.1-201ENST00000457394 519 ntBASIC15.3■□□□□ 0.04
LMX1AQ8TE12 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms