Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL353779.1-201ENST00000434793 351 ntBASIC14.62□□□□□ -0.07
RNF4P78317 KRT18P64-201ENST00000434946 1219 ntBASIC14.62□□□□□ -0.07
RNF4P78317 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.62□□□□□ -0.07
RNF4P78317 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.62□□□□□ -0.07
RNF4P78317 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.62□□□□□ -0.07
RNF4P78317 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.62□□□□□ -0.07
RNF4P78317 AC023310.3-201ENST00000557027 670 ntBASIC14.62□□□□□ -0.07
RNF4P78317 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.62□□□□□ -0.07
RNF4P78317 AC100756.1-201ENST00000562736 682 ntBASIC14.62□□□□□ -0.07
RNF4P78317 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.62□□□□□ -0.07
RNF4P78317 AC138749.3-201ENST00000567691 622 ntBASIC14.62□□□□□ -0.07
RNF4P78317 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.62□□□□□ -0.07
RNF4P78317 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
RNF4P78317 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.62□□□□□ -0.07
RNF4P78317 AC116165.1-201ENST00000611806 668 ntBASIC14.62□□□□□ -0.07
RNF4P78317 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.62□□□□□ -0.07
RNF4P78317 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.62□□□□□ -0.07
RNF4P78317 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
RNF4P78317 AL365203.3-201ENST00000609742 2057 ntBASIC14.62□□□□□ -0.07
RNF4P78317 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
RNF4P78317 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.62□□□□□ -0.07
RNF4P78317 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.62□□□□□ -0.07
RNF4P78317 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
RNF4P78317 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.61□□□□□ -0.07
RNF4P78317 AL391825.1-201ENST00000457671 1364 ntBASIC14.61□□□□□ -0.07
RNF4P78317 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
RNF4P78317 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.61□□□□□ -0.07
RNF4P78317 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.61□□□□□ -0.07
RNF4P78317 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.61□□□□□ -0.07
RNF4P78317 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.61□□□□□ -0.07
RNF4P78317 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.61□□□□□ -0.07
RNF4P78317 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.61□□□□□ -0.07
RNF4P78317 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.61□□□□□ -0.07
RNF4P78317 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
RNF4P78317 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
RNF4P78317 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.61□□□□□ -0.07
RNF4P78317 TOMM22P5-201ENST00000416399 439 ntBASIC14.61□□□□□ -0.07
RNF4P78317 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.61□□□□□ -0.07
RNF4P78317 CRB3P1-201ENST00000449338 276 ntBASIC14.61□□□□□ -0.07
RNF4P78317 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.61□□□□□ -0.07
RNF4P78317 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.61□□□□□ -0.07
RNF4P78317 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.61□□□□□ -0.07
RNF4P78317 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 AC190387.1-201ENST00000551683 408 ntBASIC14.61□□□□□ -0.07
RNF4P78317 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.61□□□□□ -0.07
RNF4P78317 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.61□□□□□ -0.07
RNF4P78317 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.61□□□□□ -0.07
RNF4P78317 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
RNF4P78317 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
RNF4P78317 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
RNF4P78317 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.61□□□□□ -0.07
RNF4P78317 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.61□□□□□ -0.07
RNF4P78317 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
RNF4P78317 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.61□□□□□ -0.07
RNF4P78317 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RNF4P78317 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RNF4P78317 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RNF4P78317 SLC7A15P-201ENST00000424028 1363 ntBASIC14.6□□□□□ -0.07
RNF4P78317 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
RNF4P78317 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.6□□□□□ -0.07
RNF4P78317 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.6□□□□□ -0.07
RNF4P78317 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.6□□□□□ -0.07
RNF4P78317 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.6□□□□□ -0.07
RNF4P78317 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.6□□□□□ -0.07
RNF4P78317 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.6□□□□□ -0.07
RNF4P78317 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RNF4P78317 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.6□□□□□ -0.07
RNF4P78317 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.6□□□□□ -0.07
RNF4P78317 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.6□□□□□ -0.07
RNF4P78317 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
RNF4P78317 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.6□□□□□ -0.07
RNF4P78317 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.6□□□□□ -0.07
RNF4P78317 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
RNF4P78317 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms