Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC21.49■■□□□ 1.03
MSH6P52701 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC21.49■■□□□ 1.03
MSH6P52701 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC21.49■■□□□ 1.03
MSH6P52701 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC21.49■■□□□ 1.03
MSH6P52701 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC21.49■■□□□ 1.03
MSH6P52701 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
MSH6P52701 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
MSH6P52701 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH6P52701 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
MSH6P52701 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH6P52701 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH6P52701 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC21.49■■□□□ 1.03
MSH6P52701 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC21.49■■□□□ 1.03
MSH6P52701 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC21.49■■□□□ 1.03
MSH6P52701 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
MSH6P52701 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC21.49■■□□□ 1.03
MSH6P52701 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH6P52701 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
MSH6P52701 RNF216P1-203ENST00000404404 2427 ntBASIC21.49■■□□□ 1.03
MSH6P52701 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
MSH6P52701 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 CMC1-204ENST00000423894 549 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH6P52701 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC21.48■■□□□ 1.03
MSH6P52701 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC21.48■■□□□ 1.03
MSH6P52701 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
MSH6P52701 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC21.48■■□□□ 1.03
MSH6P52701 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH6P52701 CSH2-206ENST00000560142 749 ntTSL 5 BASIC21.48■■□□□ 1.03
MSH6P52701 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC21.48■■□□□ 1.03
MSH6P52701 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC21.48■■□□□ 1.03
MSH6P52701 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
MSH6P52701 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC21.48■■□□□ 1.03
MSH6P52701 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC21.48■■□□□ 1.03
MSH6P52701 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH6P52701 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH6P52701 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
MSH6P52701 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
MSH6P52701 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH6P52701 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH6P52701 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
MSH6P52701 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 NPPA-201ENST00000376476 728 ntTSL 3 BASIC21.48■■□□□ 1.03
MSH6P52701 CHMP1AP1-201ENST00000445563 662 ntBASIC21.48■■□□□ 1.03
MSH6P52701 MARK2P5-201ENST00000507649 634 ntBASIC21.48■■□□□ 1.03
MSH6P52701 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC21.48■■□□□ 1.03
MSH6P52701 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
MSH6P52701 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC21.48■■□□□ 1.03
MSH6P52701 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC21.48■■□□□ 1.03
MSH6P52701 AC012044.1-201ENST00000603431 297 ntBASIC21.48■■□□□ 1.03
MSH6P52701 AC103691.2-201ENST00000618824 433 ntBASIC21.48■■□□□ 1.03
MSH6P52701 PRSS30P-206ENST00000641773 873 ntBASIC21.48■■□□□ 1.03
MSH6P52701 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
MSH6P52701 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH6P52701 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH6P52701 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH6P52701 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
MSH6P52701 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH6P52701 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
MSH6P52701 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH6P52701 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH6P52701 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH6P52701 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH6P52701 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH6P52701 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH6P52701 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC21.47■■□□□ 1.03
MSH6P52701 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
MSH6P52701 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH6P52701 PDIA3P2-201ENST00000428073 158 ntBASIC21.47■■□□□ 1.03
MSH6P52701 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC21.47■■□□□ 1.03
MSH6P52701 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC21.47■■□□□ 1.03
MSH6P52701 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
MSH6P52701 IGLV3-15-201ENST00000518356 244 ntBASIC21.47■■□□□ 1.03
MSH6P52701 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH6P52701 AC006453.1-201ENST00000636037 1257 ntBASIC21.47■■□□□ 1.03
MSH6P52701 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH6P52701 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH6P52701 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
MSH6P52701 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
MSH6P52701 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH6P52701 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
MSH6P52701 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
MSH6P52701 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
MSH6P52701 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH6P52701 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms